Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00231 ATGGGGAGGCCGTCCAAGACGCAGGTTTCTAATGACTCAACTTCCGAGGAGGAGGAGGAGGACGTCGCCGCCGCCGACAACCACCAGATCGAAGACGACGATGAGGAGCTCGAAGCGGTGGCGCAATCCGCTAGCTCCGACGAGGACGATAATTCTCCGGACGAAGCCGCCGATGACGACGACGACGACAATAAACAGGATGAGAGTAATGTTGATCCTGAAGTTAGCAAGCGCGAGAAGGTCAGATTGAGAGAAATGCAACAGTTGAAGAAACAGAAGATTCAGGAGATATTGGATGCTCAAAACGCGACCATTGATGCTGATATGAATAATAGAGGAAAGGGCCGATTGAAGTATCTCCTACAGCAAACTGAGCTTTTTGCCCATTTTGCCAAGGGTGATCAATCTTCTCAAAAGAAGACTAAAGGAAGGGGTCGCCATGCATCAAAAGTCACCGAAGAAGAGGAAGATGAAGAGTACTTGAAAGGAGAAGAAGACGGTTTAGCAAACACCCGGCTGGTGTCTCAACCTTCATGTATCCAAGGCAAGATGAGGGATTACCAACTTGCAGGGCTAAACTGGCTCATACGTTTGTATGAGAATGGCATAAATGGAATTCTAGCAGATGAAATGGGGCTAGGTAAAACCTTGCAAACTATATCTTTGTTAGGCTACCTACACGAGTTCAGAGGAATAAAAGGCCCTCATATGGTAGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTCTGCCCTGTTTTACGTGCTATAAAGTTCCTTGGGAACCCTGATGAAAGGAAGCACATAAGAGAAGAGTTACTCGTTGCTGGTAAGTTTGATGTGTGTGTTACAAGTTTTGAAATGGTAATCAAGGAGAAGTCTGCTTTACGGCGATTTAGTTGGCGCTACATTATTATTGATGAGGCACATCGAATCAAGAATGAGAATTCTCTCCTGTCAAAAACAATGAGGCTATACAACACAAACTATCGTCTCCTCATAACTGGCACACCATTACAGAACAATCTTCATGAACTCTGGGCTCTTCTCAACTTTCTTTTACCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAGTGGTTTCAAATCTCTGGTGAAAATGATGAACAAGAAGTTGTTCAACAACTACACAAGGTCCTCCGTCCATTTCTGCTTCGAAGGTTGAAGTCAGATGTTGAAAAAGGGTTGCCACCAAAAAAGGAAACCATTCTCAAGGTAGGCATGTCACAAATGCAGAAACAGTATTATAAGGCATTACTGCAGAAGGATCTAGAGGTTGTTAATGCAGGTGGAGAACGGAAACGTCTCCTAAATATAGCAATGCAACTACGGAAATGTTGTAATCACCCATATCTCTTCCAAGGTGCTGAACCTGGTCCTCCCTTTACAACAGGGGACCATCTCATTACAAATGCTGGTAAAATGGTTCTTCTCGACAAGTTACTTCCTAAACTAAAGGAGCGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGATATACTTGAAGATTATCTCATGTTCCGTGGATACCAATATTGTCGCATAGATGGTAATACTGGTGGAGAGGATCGGGATGCTTCCATTGAGAATTTCAACAAACCAGGAAGTGAAAAATTTGTCTTCTTGTTATCTACTCGGGCAGGAGGCCTTGGCATTAATCTTGCTACTGCTGATGTTGTCATTCTTTATGACAGTGACTGGAACCCACAAGTTGATCTGCAAGCTCAGGATCGTGCTCATAGGATTGGCCAAAAGAAAGAAGTTCAAGTTTTCCGATTTTGCACTGAGTATACGATTGAGGAAAAAGTCATTGAAAGAGCTTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGCCGATTAGCGGAACAGAAGTCTGTAAATAAAGACGAGTTACTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACGATTACAGACGAAGATATTGACAGAATTATTGCTAAAGGAGAGGAAGCAACAGCTGAGCTTGATGCTAAGATGAAAAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACACTGCTGAGTTGTATGATTTTGATGATGAGAAGGATGAGAACAAGTTTGATTTTAAAAAAATTGTGAGTGAAAACTGGGTCGAGCCACCAAGAAGAGAACGGAAGCGCAATTATTCAGAGTCGGAATACTTCAAGCAAACAATGCGCCAAGGTGCTCCAACTAAACCAAAAGAGCCACGCATTCCTAGGATGCCTCAATTGCATGATTTCCAGTTTTTCAACACGCAAAGGCTGAGTGAGCTGTATGAAAAGGAAGTTCGCTACCTCATGCAAACACATCAGAAGAATCAGTTGAAAGACTCCATAGATGTCGATGAACCAGAAGAGGTTGGAGACCCATTGACTGCTGAAGAGTTAGAAGAGAAGGAACAGTTGCTTGAAGAGGGATTTTCATCATGGAGCCGGAAGGATTTTAATGCTTTCATTAGGGCCTGTGAGAAGTATGGCCGAAATGATATAAAAAATATTGCTTCTGAGATGGAAGGAAAAACTCAAGAGGAGGTTGAAAGATATGCAAAAGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATTAAGAACATTGAGAGAGGGGAGGCGAGAATATCCCGGAAAGATGAAATTATGAAAGCTATTGGGAAGAAGTTGGACCGCTATAAGAATCCTTGGTTAGAATTGAAGATACAATACGGACAAAACAAAGGGAAGTTATACAATGAAGAATGTGATCGATTCATGATATGCATGATTCACAAACTTGGCTATGGTAATTGGGATGAGTTGAAGGCAGCTTTTCGTATGTCTCCATTATTTCGTTTTGATTGGTTTGTCAAGTCTCGCACAACACAGGAACTTACAAGGAGGTGTGACACCCTCATTCGGCTGGTAGAGAAGGAAAATCAAGAATATGATGAGAGGGAGAGGCAAGCTCGTAAAGAAAAGAAACTTGCGGCTAAGAGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGACCGAGAGTCCCTCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTAAGCTCGGGGAAGAAGAAAAAATAA 3180 0.4201 MGRPSKTQVSNDSTSEEEEEDVAAADNHQIEDDDEELEAVAQSASSDEDDNSPDEAADDDDDDNKQDESNVDPEVSKREKVRLREMQQLKKQKIQEILDAQNATIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSQKKTKGRGRHASKVTEEEEDEEYLKGEEDGLANTRLVSQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERKHIREELLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDEQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPFTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGEDRDASIENFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKSVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKFDFKKIVSENWVEPPRRERKRNYSESEYFKQTMRQGAPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDSIDVDEPEEVGDPLTAEELEEKEQLLEEGFSSWSRKDFNAFIRACEKYGRNDIKNIASEMEGKTQEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLAAKSMTPSKRSMPRQTESPSLKKRKQLTMDDYLSSGKKKK* 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00231 1059 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 747 837 IPR036306 GO:0003677|GO:0006338|GO:0031491
Lapu3g00231 1059 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 361 IPR014001 -
Lapu3g00231 1059 Coils Coil 985 1019 - -
Lapu3g00231 1059 MobiDBLite consensus disorder prediction 14 68 - -
Lapu3g00231 1059 Pfam HAND 748 831 IPR015194 GO:0003677|GO:0006338|GO:0031491
Lapu3g00231 1059 SMART sant 835 884 IPR001005 -
Lapu3g00231 1059 SMART sant 937 998 IPR001005 -
Lapu3g00231 1059 Gene3D - 923 1026 - -
Lapu3g00231 1059 MobiDBLite consensus disorder prediction 1006 1023 - -
Lapu3g00231 1059 FunFam Chromatin-remodeling complex ATPase 185 400 - -
Lapu3g00231 1059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 399 IPR027417 -
Lapu3g00231 1059 CDD SF2_C_SNF 485 610 - -
Lapu3g00231 1059 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 88 1043 - -
Lapu3g00231 1059 ProSiteProfiles SANT domain profile. 834 886 IPR017884 -
Lapu3g00231 1059 FunFam ISWI chromatin-remodeling complex ATPase CHR11 736 834 - -
Lapu3g00231 1059 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 835 889 - -
Lapu3g00231 1059 FunFam ISWI chromatin-remodeling complex ATPase CHR11 405 697 - -
Lapu3g00231 1059 MobiDBLite consensus disorder prediction 135 156 - -
Lapu3g00231 1059 Pfam SLIDE 892 1002 IPR015195 GO:0003677|GO:0005634|GO:0006338
Lapu3g00231 1059 MobiDBLite consensus disorder prediction 1006 1059 - -
Lapu3g00231 1059 MobiDBLite consensus disorder prediction 132 162 - -
Lapu3g00231 1059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 682 IPR027417 -
Lapu3g00231 1059 Gene3D - 405 697 IPR027417 -
Lapu3g00231 1059 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 489 640 IPR001650 -
Lapu3g00231 1059 Gene3D - 835 889 - -
Lapu3g00231 1059 SUPERFAMILY Homeodomain-like 838 888 IPR009057 -
Lapu3g00231 1059 FunFam ISWI chromatin-remodeling complex ATPase CHR11 923 1027 - -
Lapu3g00231 1059 Coils Coil 83 103 - -
Lapu3g00231 1059 SMART helicmild6 515 599 IPR001650 -
Lapu3g00231 1059 SMART ultradead3 180 372 IPR014001 -
Lapu3g00231 1059 Pfam SNF2-related domain 197 464 IPR000330 GO:0005524|GO:0140658
Lapu3g00231 1059 Gene3D iswi atpase 890 922 - -
Lapu3g00231 1059 MobiDBLite consensus disorder prediction 1 80 - -
Lapu3g00231 1059 CDD SANT 838 882 IPR001005 -
Lapu3g00231 1059 Gene3D ISWI, HAND domain 736 834 IPR036306 GO:0003677|GO:0006338|GO:0031491
Lapu3g00231 1059 SUPERFAMILY Homeodomain-like 890 1012 IPR009057 -
Lapu3g00231 1059 Gene3D - 185 400 IPR038718 -
Lapu3g00231 1059 CDD DEXHc_SMARCA1_SMARCA5 181 401 IPR044754 GO:0005524
Lapu3g00231 1059 Pfam Helicase conserved C-terminal domain 487 599 IPR001650 -
Lapu3g00231 1059 MobiDBLite consensus disorder prediction 1035 1059 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00231 Lapu-Chr3 2421880 2431419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00231 205 626 RAD5 or RAD16-like Gene Family AT1G02670 27.327 2.04e-43 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu3g00231 SNF2_N 1.3e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00231 K11654 - gmx:100791510 1984.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00231 3 2421880 2431419 Lapu3g00231 3 2421880 2431419 ECH
Lapu3g00231 3 2421880 2431419 Lapu6g01485 6 14680645 14691367 PCT