Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00230 ATGAACCTCCTGGAAGGCTCTGTCAACGAACGTCTTGATTTTGGGAAGATGGAATATGGGTGCAAGCATTACAAGAGAAGATGCCGGATTCGTGCCCCCTGCTGCAACGAGATCTACTCATGCCGTCACTGTCACAACGAGGAAGCGAGTTTGTCGAAGAATTCATTTGATCGCCACGAACTTGTTCGCCAGGATGTTAAACAAGTTGTTTGTTCAGTTTGTGACACTGAGCAATCTGTCGCTCAAGTTTGCACTAACTGTGGCATCAAAATGGGAGAATACTTCTGCAACATCTGCAAATTCTTCGATGATGATGTAGAGAAACAACAGTTTCATTGTGATGATTGCGGAATCTGCAGGGTCGGTGGTCGAGAAAAATTTTTCCATTGCAAGAAGTGTGGATCTTGTTATTCAGTTAGTCTGCGTGATAATCATTTATGTGTGGAGAACTCTATGAGGCATCACTGCCCCATTTGTTATGAGTACCTTTTTGATTCATTGAAAGACACCATTGTTATGAAATGTGGTCACACAATGCACCAAGAATGTTACCACGAGATGGTAAAACATGACAGATATTGCTGTCCCATATGTTCCAAGTCGGTGGTGGACATGTCTAGGACTTGGAAGAGAATTGATGAAGAGATTGAAGCATCTATCATGCCTGAAGAATATCAACACCGGAAGGTTTGGATACTATGTAATGACTGCAATGACACAACAGAAGTTAATTTCCACATTCTTGGCCAAAAATGTGGCCATTGCAATTCATATAATACTCGCGCAATTGCGCCTCCAGTTCTTCCTCAATGA 813 0.4231 MNLLEGSVNERLDFGKMEYGCKHYKRRCRIRAPCCNEIYSCRHCHNEEASLSKNSFDRHELVRQDVKQVVCSVCDTEQSVAQVCTNCGIKMGEYFCNICKFFDDDVEKQQFHCDDCGICRVGGREKFFHCKKCGSCYSVSLRDNHLCVENSMRHHCPICYEYLFDSLKDTIVMKCGHTMHQECYHEMVKHDRYCCPICSKSVVDMSRTWKRIDEEIEASIMPEEYQHRKVWILCNDCNDTTEVNFHILGQKCGHCNSYNTRAIAPPVLPQ* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00230 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 229 IPR013083 -
Lapu3g00230 270 Pfam CHY zinc finger 21 101 IPR008913 GO:0008270
Lapu3g00230 270 Pfam Zinc-ribbon 203 261 IPR039512 -
Lapu3g00230 270 FunFam RING finger and CHY zinc finger domain-containing protein 1 227 269 - -
Lapu3g00230 270 SUPERFAMILY RING/U-box 155 205 - -
Lapu3g00230 270 SMART ring_2 156 198 IPR001841 -
Lapu3g00230 270 SUPERFAMILY Zinc hairpin stack 92 149 IPR037275 -
Lapu3g00230 270 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 14 266 - -
Lapu3g00230 270 ProSiteProfiles Zinc finger CTCHY-type profile. 91 155 IPR017921 -
Lapu3g00230 270 ProSiteProfiles Zinc finger RING-type profile. 156 199 IPR001841 -
Lapu3g00230 270 SUPERFAMILY CHY zinc finger-like 17 90 IPR037274 GO:0008270
Lapu3g00230 270 Gene3D - 230 265 - -
Lapu3g00230 270 Pfam Ring finger domain 155 198 IPR001841 -
Lapu3g00230 270 ProSiteProfiles Zinc finger CHY-type profile. 14 89 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00230 Lapu-Chr3 2409946 2413858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00230 5 269 C2H2 Transcription Factor Family AT3G18290 39.286 6.22e-56 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00230 K10144 - gmx:100792038 547.74