Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00228 ATGAAAGGTGGCACTACTGAAAAGGAAATTGAAACTCACTCTACCATGCCAACACTGTCTCAAATCCCACCTTCTTCTTCTTTTCTTCACCCTTCAACCATTGCTGAAACAACTGCTAACACCACCTCCAGAAAGCGTGTTAAGAGAATGGGTCACACCAATTTCGAGAGCCTTAACATGGAACGTGAAAGAAGGTGTAAGATGACTCAAATGTTCACTCAGCTTCGAACCTCTGTCCCTGGTCTCTTACCTCAGGCTACAAGAGAAGTGATAATAAACGAGACAATTGGGTACATAAAGGAGCTTGAGAAGAAGAAGCAAACGTTGGAGGAGTTGAAAGAAAGCATGAAAGGAGTGGAAGGGTCCAAGGTTGAATGTGGTAACAATAATAGAAATTGTTCAATCATGGTTACTGTTTCTGCTAATGTTGCATTCTTTGGCATTCAATGGGTGCCTCGACCAGGTTTGGTGACACAAATTTTAAAGGTGTTTTGCAATCACCAAGCAGAGATTTTGGCTGCAAATGTGTCTGTTAATAATGGGAAATTGATATTGGCAATCACAGCTTTGGTGCAAAATAATGGAAACGGTGTGGTTGAAAATATTAAAACAGAAATTATGGGTTTGTAG 630 0.4048 MKGGTTEKEIETHSTMPTLSQIPPSSSFLHPSTIAETTANTTSRKRVKRMGHTNFESLNMERERRCKMTQMFTQLRTSVPGLLPQATREVIINETIGYIKELEKKKQTLEELKESMKGVEGSKVECGNNNRNCSIMVTVSANVAFFGIQWVPRPGLVTQILKVFCNHQAEILAANVSVNNGKLILAITALVQNNGNGVVENIKTEIMGL* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00228 209 MobiDBLite consensus disorder prediction 1 31 - -
Lapu3g00228 209 Gene3D - 37 118 IPR036638 GO:0046983
Lapu3g00228 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 59 116 IPR036638 GO:0046983
Lapu3g00228 209 Pfam Helix-loop-helix DNA-binding domain 60 103 IPR011598 GO:0046983
Lapu3g00228 209 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 36 199 - -
Lapu3g00228 209 SMART finulus 58 108 IPR011598 GO:0046983
Lapu3g00228 209 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 102 IPR011598 GO:0046983
Lapu3g00228 209 MobiDBLite consensus disorder prediction 10 31 - -
Lapu3g00228 209 Coils Coil 92 122 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00228 30 110 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 37.500 5.14e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g00228 HLH 7.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00228 - - gmx:102670256 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00228 3 2397395 2398220 Lapu3g00228 3 2397395 2398220 ECH