LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu3g00224	ATGGGGTGTGTGTTTGGGAAAGGAGCATCAAAGAGGAAAGAGGAAGTGAAAGCTGAAAGGGCAGAAGAGTGTGTTGTTCAGAACGGTGGGAATGTGAAGGAGGGTGGAGAAGAGGAAAAGATCAAGCCCCCAAAAGGGGAGAGAAGGCGATCTTCGAAGCCGAATCCAAGGTTGAGCAATCCACCTAACCATGTACATGGTGAGCAAGTAGCAGCAGGGTGGCCATCTTGGCTCTCCAAGGTTGCTGGGGAAGCTATTAATGGGTTGATCCCTAGAAGAGCTGACTCTTTTGAAAAGCTGAATAAGGTTGGACAAGGTACATACAGCAATGTTTACAAAGCAAAGGATACTTTGACAGGGAAAATTGTTGCCCTAAAGAAGGTACGTTTTGACAATTTAGAACCCGAGAGTGTCAAATTCATGGCCAGAGAGATCCTTATTCTGCGCCATCTGGATCATCCCAACGTTGTCAAACTGGAAGGTTTAGTGACTTCAAGGATGTCATGCAGTTTGTACCTTGTGTTTGAATACATGGAGCATGATTTGGCTGGACTTGCTACAAGTCCAACAATAAAGTTCACAGAGTCTCAGGTTAAATGTTACATGCATCAGCTACTTTCTGGGCTGGAACACTGTCACAACCGTCATGTGCTACATCGTGATATAAAGGGGTCAAACCTTCTTATTGACAATGAAGGAATTCTTAGGATTGCTGATTTTGGATTAGCATCCTTCTTTGATCCTAATCAAAAGCACCCTATGACCAGCAGGGTGGTTACTTTATGGTATCGACCTCCAGAGCTTCTCCTTGGAGCCACTGATTATGGTGTAGAAGTGGACCTCTGGAGTGCTGGTTGCATTCTTGCTGAGTTGTTAGCTGGCAAGCCTATTATGCCTGGTCGAACCGAGGTGGAGCAACTACACAAGATATTTAAGCTTTGTGGTTCTCCTTCTGATGAATATTGGAGAAAATCAAAGCTGCCACATGCTACCATTTTTAAGCCCCGACAATCATACAAGAGGTGCATAGAAGAGACATTTAAGAATTTCCCAGCATCTTCCCTACCACTAATTGAGACCCTTCTTGCAATTGATCCAGCTGAACGCCAAACTGCCACAGCTGCACTACATAGTGATTTCTTTACTACAAAACCTTATGCCTGTGAACCCTCTAGTCTTCCAAAATATCCTCCCAGCAAGGAGATGGATACGAAACTACGGGATGAAGAAGCTAGAAGATTGAGAGCTGCTAACAAAGCTAATGCTGGTGTAAAGAAATCTCGTCCACGAGATCGAGGTGGAAGGGGAATTCCAATTCCAGATTCCAATGCTGAGTTGCAAGCAAATATTGATAAATGGCGACTGGTGACACATGCAAATGCGAAGAGTAAGAGTGAGAAGTTTCCTCCTCCTCATGAAGATGGGACTTTAGGCTATCCTTTAGGTTCTTCACATCACATGGATCCAATTTTTGATCCTCCGGATGTTGCATTTAGTTCCACAAACTTATCATATCCTAAATCAAATATCCAGACCTGGTCTGGTCCATTAGTGGAAACTAGTTTGGATGCACCAAGGAGAAAGAAGAACATGGCAGGGAATGGGCGCACACATTCAAAGAAGGACTCTTATAGATAG	1638	0.4402	MGCVFGKGASKRKEEVKAERAEECVVQNGGNVKEGGEEEKIKPPKGERRRSSKPNPRLSNPPNHVHGEQVAAGWPSWLSKVAGEAINGLIPRRADSFEKLNKVGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRHLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLATSPTIKFTESQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDNEGILRIADFGLASFFDPNQKHPMTSRVVTLWYRPPELLLGATDYGVEVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWRKSKLPHATIFKPRQSYKRCIEETFKNFPASSLPLIETLLAIDPAERQTATAALHSDFFTTKPYACEPSSLPKYPPSKEMDTKLRDEEARRLRAANKANAGVKKSRPRDRGGRGIPIPDSNAELQANIDKWRLVTHANAKSKSEKFPPPHEDGTLGYPLGSSHHMDPIFDPPDVAFSSTNLSYPKSNIQTWSGPLVETSLDAPRRKKNMAGNGRTHSKKDSYR*	546

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu3g00224	545	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	217	229	IPR008271	GO:0004672\|GO:0006468
	Lapu3g00224	545	MobiDBLite	consensus disorder prediction	1	68	-	-
	Lapu3g00224	545	Pfam	Protein kinase domain	97	381	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu3g00224	545	MobiDBLite	consensus disorder prediction	8	22	-	-
	Lapu3g00224	545	MobiDBLite	consensus disorder prediction	522	545	-	-
	Lapu3g00224	545	Gene3D	Transferase(Phosphotransferase) domain 1	180	421	-	-
	Lapu3g00224	545	ProSiteProfiles	Protein kinase domain profile.	97	381	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu3g00224	545	Gene3D	Phosphorylase Kinase; domain 1	86	179	-	-
	Lapu3g00224	545	MobiDBLite	consensus disorder prediction	508	545	-	-
	Lapu3g00224	545	MobiDBLite	consensus disorder prediction	419	443	-	-
	Lapu3g00224	545	PANTHER	CELL DIVISION PROTEIN KINASE	95	385	-	-
	Lapu3g00224	545	CDD	STKc_CDK9_like	97	381	-	-
	Lapu3g00224	545	MobiDBLite	consensus disorder prediction	33	54	-	-
	Lapu3g00224	545	FunFam	probable serine/threonine-protein kinase At1g54610	84	179	-	-
	Lapu3g00224	545	FunFam	probable serine/threonine-protein kinase At1g54610	180	421	-	-
	Lapu3g00224	545	SMART	serkin_6	97	381	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu3g00224	545	SUPERFAMILY	Protein kinase-like (PK-like)	92	386	IPR011009	-
	Lapu3g00224	545	ProSitePatterns	Protein kinases ATP-binding region signature.	103	126	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu3g00224	Lapu-Chr3	2366384	2370950	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu3g00224	92	419	Core Cell Cycle Gene Families	AT5G10270	51.453	3.62e-115	349

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Lapu3g00224		Pkinase	1e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu3g00224	K08819		-	gmx:100791757	975.696