Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00223 ATGGATGATGGGTTGGAGCAGAGTTGGTGGGCCAACATGCCCCACGAGCTTCTCAGAGAAGTCCTCCTCCGAATTGAGTCCTCGGAGGCCAAGTGGCCACCGCGGAGGAGCGTGGTAGCTTGTGCCGGAGTTTGCCGCACCTGGAGGCTCATCCTCAAGGAGATTGTCAAGCCACCTCAACTCTCTTCCAACATAACATTCCCCATCTCTCTCAGACAGCCTGGCCCAAAGGAACATCTACTTCAGTGCTTCATTAGGCGCAACAGTGGCACACAGACATATTATCTGTTTCTCAGTTTATCTAGTGCACTAGCTGATGATGGGAAGTTCCTTCTAGCTGCGCGCAAGTACAGACGCCCAACCTGCACAGATTATATTATCTCCCTGAATGCGGATGATATGTCCAGGGAAAGCAATGCCTTCTTAGGGAAATTGAGATCAAATTTTTTAGGAACCAAGTTCACAATCTACGATAGCCAACTGCCTCATGCAGGGGCAAAGACGACAAAAAGTTGCTCCAGTAAGCTGGTGAATCCAAAACAAGTTTCACCTAAGGTCCCTGCAGGCAACTATCCAGTTGCTCATATCTCATATGAATTGAATGTATTAGGCTCCAGGGGGCCAAGGAGAATGCATTGTGTCATAGATACCATTCCTGCTTCTGCTATTGAATCAGAACGGGTAGTTCCTTCACAGACCAGTTATTCTGTTAGTAACATAGGTACTTCATTCCCATTTTTTCAGACAAACTTAACTCATCCAGAAAACTCTATATCTGGAGACCAAAACAATAAAAAAGATGATGTTCTAGTGTTGAGAAATAAGGCTGCCAGGTGGCACGAGCAGATGCAGTGTTGGTGCTTAAACTTTCATGGGCGAGTGACTATTGCTTCAGTTAAAAACTTTCAGCTAGCTGCTTTGCCAGTAAATGGACATGCTGAACCACAAGAGGATGATGTCATCCTCCAATTTGGAAAAGTTGGGAAGGACTTGTTCACAATGGATTACCGGTACCCCATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTCGCTACCACGGTTGCTTGTGAATGA 1083 0.4626 MDDGLEQSWWANMPHELLREVLLRIESSEAKWPPRRSVVACAGVCRTWRLILKEIVKPPQLSSNITFPISLRQPGPKEHLLQCFIRRNSGTQTYYLFLSLSSALADDGKFLLAARKYRRPTCTDYIISLNADDMSRESNAFLGKLRSNFLGTKFTIYDSQLPHAGAKTTKSCSSKLVNPKQVSPKVPAGNYPVAHISYELNVLGSRGPRRMHCVIDTIPASAIESERVVPSQTSYSVSNIGTSFPFFQTNLTHPENSISGDQNNKKDDVLVLRNKAARWHEQMQCWCLNFHGRVTIASVKNFQLAALPVNGHAEPQEDDVILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFATTVACE* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00223 360 Gene3D Tubby Protein; Chain A 68 360 IPR025659 -
Lapu3g00223 360 CDD F-box_AtTLP-like 10 54 - -
Lapu3g00223 360 ProSitePatterns Tub family signature 1. 290 303 IPR018066 -
Lapu3g00223 360 PANTHER TUBBY-RELATED 7 357 - -
Lapu3g00223 360 PRINTS Tubby superfamily signature 141 165 IPR000007 -
Lapu3g00223 360 PRINTS Tubby superfamily signature 125 141 IPR000007 -
Lapu3g00223 360 PRINTS Tubby superfamily signature 317 336 IPR000007 -
Lapu3g00223 360 PRINTS Tubby superfamily signature 338 360 IPR000007 -
Lapu3g00223 360 PRINTS Tubby superfamily signature 290 306 IPR000007 -
Lapu3g00223 360 PRINTS Tubby superfamily signature 190 217 IPR000007 -
Lapu3g00223 360 PRINTS Tubby superfamily signature 272 289 IPR000007 -
Lapu3g00223 360 SUPERFAMILY F-box domain 4 53 IPR036047 GO:0005515
Lapu3g00223 360 SUPERFAMILY Tubby C-terminal domain-like 59 360 IPR025659 -
Lapu3g00223 360 Pfam F-box domain 10 56 IPR001810 GO:0005515
Lapu3g00223 360 Pfam Tub family 71 355 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00223 Lapu-Chr3 2356488 2358936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00223 3 360 TUB Transcription Factor Family AT2G47900 64.187 6.99e-173 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lapu3g00223 Tub 1.6e-107 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00223 K19600 - gmx:100794141 620.157