LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu3g00217	ATGGACTGCAATAAAGAAGAGGCCTTAAGGGCCAAGGACATTGCTGAAAAGAAGATGGAAAACAGGGATTTTATGGGGGCTCGTAAAATTGCTCTAAAGGCTCAGCAGCTGTACCCCGATCTGGAAAATATTGCTCAAATGCTTGTTGTTTGTGATGTGCACTGCTGTGCTGAGAAGAAATTGTATGGTAATGAGATGGATTGGTATGGAATTCTACAGGTTGAACAGACAGCTGTTGATGTACTAATTAAGAAGCAATATAGAAAGCTCGCCCTCCAACTTCATCCTGACAAAAACAAGTTTGCTGGTGCCGAGGCCGCATTTAAGCTGATTGGGGAAGCTCAAAGAGTACTTTTGGACAGAGAAAGACGTCGTATTTTTGACATGAAGCGTAGAGTTCCAATGAACAAACCTGCTGCATCACATTTTAATACTACGGTGTGGAGGAATGTTAGGCCCAACTTTACAAGCACAACTTCTCAGCAGCAGCAGCAGCAATCTAGGCAGCCAATGCAGGAGCAGCAATCTAGGCAGCCAATGCAGGAGCAGCAATCTAGGCAGCCAATGCAGGAGCAGCAAAATGGTCTTCGCCCTACTTTTTGGACAATCTGCCCAATTTGTCGTGTTAGGTATCAGTATTACAAAGAAATTTTAAATAAGTCTCTTCGCTGTCACAATTGTAAAAGGCCCTTTGTTGCATATGAACTGGAAAAACAACGGACACCATCACCAGCGACTAATTCAACTCACAAAGCTTCTGACCAGCAGGAAGGTGGTTTGAATCATGGTGCTTTCAAGGTAGGTTCTGGATCTCAAGGCAATTCACGTGCTGAGAAGTCCAATCCAGGGTCATCTGATAAAAAGGGACCTGCTAGTGTTTCTGGAAAACTTAATGGAAAGCGGAAAAGGAAGCAGGTGGCAGAATCGAGTGAAGGTTCTGATCCTTTGAGGGACAGTGATTCTGACGAAGATAGAATTGCTGGAAAGGATGGTTATTCCAGTGTAGAGAACCATTCAACTTCTAGAGAAGGGCAGCCACGCAGATCTAACCGGAAAAAGCATCAAGTTTCCTACAAGGAGAATGTGAACAGCAATGGTGATGGTGAGAAAACTAAAATGAATGACCAGAATGGTTTAGCTGCTGCACACAAAGAAGTAAATCAGAAGCAACCTTTTTATTCTGAAAGAAATGAGGAAACTAACATGTCTAAGGGAAAAGATGCTGTGGGAGGGTCAAAGCAGGTGGATGAAACCTCAGATCGTTCTCCAGATTCAACCTCCAAAGTATCAAATCAACCAAATGTTTATGTCTTTCCTGATGCAGAGTTCAGTGATTTTGACAAGGATAAGAGAAAAGAATGCTTTGCTGCAGGGCAGATTTGGGCTGTTTATGACACAGCAGAAGGTATGCCTAGATACTATGTTTTAATCAAGAAAGTTCTGTCTCCTGGATTCAAACTGCAGATAACATGGTTTGAATCACATCCGGTCTGGAAGGATGAAATCAACTGGGTGAACGAGGAATTGCCTGTTGCTTGTGGGAAGTATAAACTTGGTGACACTGACGTCACTGATGATCATCTGATGTTCTCTCATCTAGTTTTGAGCGAAAAAATTAGCCGTAATACTTTTAAAGTGTATCCTAGAAAGGGGGAAACTTGGGCCCTTTTTAAAAATTGGGATATTAAATGGTACATGGATGCGAAATCTCACCAGCTGTATGAATATGAGTTTGTTGAAATCTTGACAGATTATGTTGAAGAGGAGGGTGTGTATGTTGTCTACTTGACTAAGTTGAAAGATTTTGTATGTCTCTTCCTTCAAAATACAAAGGAAGCCGACAAATCATTTCAAATTCCACCACTGGAGTTATTTAGATTCTCTCACAGGGTTCCATCTTTCAGAATGACTGGTGAGGAAAGGGCTGGTGTACCTACAGGATCTTATGAACTTGATCCTGGAGCTTTGCCTGTAAATTTTGAAGAGAAGGTTGGTCACGGTTCATCTGGCAGTGAGAATACAGGGACTTCGAATAGATCAGAACCCCTAATGAAATCTGAGGGAGGTACGTCCATTCCCAAGGTTAATCTAGAAGGAAGCAATTTGGTGAGAGAGAACAAGGATTCCGTTGATGACAGCTATGATTGTTGTGCTCCTCAGGCACCGGGATCAGAAACAATTGAAATTCCAGATACTCAATTCTTTAATTTTGATGCTGGGAGGTCCCTTGAGAAGTTTCAGATTGGTCAAATTTGGGCATTTTACAGTGACGAGGATGGATTGCCAAAATATTACGGTCACATTAATAAGATTTTGACAAGCCCAGATCTTGAATTGCACGTTTCCTGGCTGACTTGCTACTGGCTACCAGAGAATACCACTGAATGGAAAGACAAAGATATGGGTATGCTTATTTCATGCGGCCGATTTAAAGTTAATAAAACAGATGAATTTCTCAGTATTTATAGTACTACCTCTTCTGTTTCACATCAAGTGCACGCTGATGCGGTTGGAAAGAATAAGTATTATGCCATCTTTCCGAGAAAAGGTGAAGTTTGGGCGTTATATAGAAAATGGACAAATAAAATGAAGTGTTCTGAGTTGAAAAAATGGGAGTATGACATAGTGGAAGTTGTCGAAGAAACTGATTTGTTCATAAATGTTTTAGTTCTGGAGTTTGTCAGTGGGTTTAGTTCCGTTTTCAGGGGCAAATCAAATGAAGGATCATCTGTCAACCTGAGAATACCTAGGAAAGAGTTGCTTAGGTTCTCCCACCAAATCCCAGCTTTCAAACTGACAGAAGAGCATGGCAATCTAAGAGACTTCTGGGAACTTGATCCGGGTGCGCTACCAATTCATTATTATGGCTTGAGATGA	2877	0.4154	MDCNKEEALRAKDIAEKKMENRDFMGARKIALKAQQLYPDLENIAQMLVVCDVHCCAEKKLYGNEMDWYGILQVEQTAVDVLIKKQYRKLALQLHPDKNKFAGAEAAFKLIGEAQRVLLDRERRRIFDMKRRVPMNKPAASHFNTTVWRNVRPNFTSTTSQQQQQQSRQPMQEQQSRQPMQEQQSRQPMQEQQNGLRPTFWTICPICRVRYQYYKEILNKSLRCHNCKRPFVAYELEKQRTPSPATNSTHKASDQQEGGLNHGAFKVGSGSQGNSRAEKSNPGSSDKKGPASVSGKLNGKRKRKQVAESSEGSDPLRDSDSDEDRIAGKDGYSSVENHSTSREGQPRRSNRKKHQVSYKENVNSNGDGEKTKMNDQNGLAAAHKEVNQKQPFYSERNEETNMSKGKDAVGGSKQVDETSDRSPDSTSKVSNQPNVYVFPDAEFSDFDKDKRKECFAAGQIWAVYDTAEGMPRYYVLIKKVLSPGFKLQITWFESHPVWKDEINWVNEELPVACGKYKLGDTDVTDDHLMFSHLVLSEKISRNTFKVYPRKGETWALFKNWDIKWYMDAKSHQLYEYEFVEILTDYVEEEGVYVVYLTKLKDFVCLFLQNTKEADKSFQIPPLELFRFSHRVPSFRMTGEERAGVPTGSYELDPGALPVNFEEKVGHGSSGSENTGTSNRSEPLMKSEGGTSIPKVNLEGSNLVRENKDSVDDSYDCCAPQAPGSETIEIPDTQFFNFDAGRSLEKFQIGQIWAFYSDEDGLPKYYGHINKILTSPDLELHVSWLTCYWLPENTTEWKDKDMGMLISCGRFKVNKTDEFLSIYSTTSSVSHQVHADAVGKNKYYAIFPRKGEVWALYRKWTNKMKCSELKKWEYDIVEVVEETDLFINVLVLEFVSGFSSVFRGKSNEGSSVNLRIPRKELLRFSHQIPAFKLTEEHGNLRDFWELDPGALPIHYYGLR*	959

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu3g00217	958	MobiDBLite	consensus disorder prediction	301	331	-	-
	Lapu3g00217	958	MobiDBLite	consensus disorder prediction	661	695	-	-
	Lapu3g00217	958	ProSiteProfiles	dnaJ domain profile.	67	131	IPR001623	-
	Lapu3g00217	958	SUPERFAMILY	Chaperone J-domain	62	133	IPR036869	-
	Lapu3g00217	958	PRINTS	DnaJ domain signature	69	87	IPR001623	-
	Lapu3g00217	958	PRINTS	DnaJ domain signature	87	102	IPR001623	-
	Lapu3g00217	958	PRINTS	DnaJ domain signature	103	123	IPR001623	-
	Lapu3g00217	958	PANTHER	DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED	1	951	-	-
	Lapu3g00217	958	MobiDBLite	consensus disorder prediction	156	194	-	-
	Lapu3g00217	958	MobiDBLite	consensus disorder prediction	666	685	-	-
	Lapu3g00217	958	Gene3D	DnaJ domain	64	195	IPR036869	-
	Lapu3g00217	958	Pfam	DnaJ domain	67	128	IPR001623	-
	Lapu3g00217	958	Pfam	Domain of unknown function (DUF3444)	434	640	IPR024593	-
	Lapu3g00217	958	Pfam	Domain of unknown function (DUF3444)	725	935	IPR024593	-
	Lapu3g00217	958	SMART	dnaj_3	66	123	IPR001623	-
	Lapu3g00217	958	MobiDBLite	consensus disorder prediction	240	256	-	-
	Lapu3g00217	958	CDD	DnaJ	67	120	IPR001623	-
	Lapu3g00217	958	MobiDBLite	consensus disorder prediction	238	433	-	-
	Lapu3g00217	958	MobiDBLite	consensus disorder prediction	267	288	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu3g00217	Lapu-Chr3	2282868	2287373	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu3g00217	4	238	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	32.500	6.83e-26	108

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu3g00217	-		-	gmx:100795200	1514.21