Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00213 ATGGGCAGGTACCGAAGCGGGAGCAGAAGTTACAGTCCTCGACGACGAAGCAGGACTCCACCGCCACCGCCACCGCGTGGTCGCAAGCGCTATGTCGACGATCGCTACGGTGACAGCAGGTCATACAGAGACCGTCGCTCACCTCTTCCTTCTGGCTTGCTTGTTCGCAATCTCCCTCTCGATGCGAGGCCTGAAGATCTTAGGATCCCTTTTGAGCGCTATGGTCCTGTGAAGGATGTTTATCTACCTAAAAATTACTATACTGGTGAGCCCCGGGGCTTTGGATTTGTCAAATATCGATATGGTGAAGATGCAGCTGAGGCAAAACAACATCTTAATCATACTATCATTGGTGGACGTGAAATAAGAATTGTTTTTGCTGAGGAAAATAGGAAAACTCCTCAAGAAATGCGGCTTAGTTCTCGAGGAAGTTCTCGATATGGGGGTGGTAGAAGGAGAAATCGATCTAGATCCCCACAACGCCGATATCGCTCCTATTCTCGGTCTCCATCACCTGTGAGGGATGATTCAAGGGATGACAGGGGTAGGGATGATTATTATTCTCCTGAGCGATCAAGATCTTATTCCAGGTCTCTCTCCCCAAGTGGTGGGAAGGACTACAGGAAGTCCCCTCGTGTCAGGGAGAATGGTCGTAGTCCTGATGAAAAGAAGGGTCAGACACCTAGCAGATCCCAGAGTCCTAGGGGTAATGATCGCAGTCCTTCGAGGTCTCGTTCACTGTCATACAGTCCACGCTGA 759 0.5007 MGRYRSGSRSYSPRRRSRTPPPPPPRGRKRYVDDRYGDSRSYRDRRSPLPSGLLVRNLPLDARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEAKQHLNHTIIGGREIRIVFAEENRKTPQEMRLSSRGSSRYGGGRRRNRSRSPQRRYRSYSRSPSPVRDDSRDDRGRDDYYSPERSRSYSRSLSPSGGKDYRKSPRVRENGRSPDEKKGQTPSRSQSPRGNDRSPSRSRSLSYSPR* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00213 252 SMART rrm1_1 52 125 IPR000504 GO:0003723
Lapu3g00213 252 MobiDBLite consensus disorder prediction 226 252 - -
Lapu3g00213 252 MobiDBLite consensus disorder prediction 1 49 - -
Lapu3g00213 252 MobiDBLite consensus disorder prediction 168 191 - -
Lapu3g00213 252 Gene3D - 28 168 IPR012677 -
Lapu3g00213 252 MobiDBLite consensus disorder prediction 148 162 - -
Lapu3g00213 252 MobiDBLite consensus disorder prediction 207 225 - -
Lapu3g00213 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 123 IPR000504 GO:0003723
Lapu3g00213 252 MobiDBLite consensus disorder prediction 27 45 - -
Lapu3g00213 252 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 52 240 - -
Lapu3g00213 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Lapu3g00213 252 SUPERFAMILY RNA-binding domain, RBD 53 157 IPR035979 GO:0003676
Lapu3g00213 252 MobiDBLite consensus disorder prediction 132 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00213 Lapu-Chr3 2261144 2266186 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00213 55 113 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 1.61e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00213 K12900 - gmx:100788749 285.034