Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00200 ATGGGTTGTGTCCATGGCAGGTGTTGCTGTGGTGAGCGTTCTTCATCAGAGGATGGTTCTAGGGATTACCGGGAAACTGGCTTCATTCGTGGCCACCGGAAAAGCATACTCGCGCAGAGATCACTGAAGCGTGCTCCTGTTCCTTCCCACAACTTCATTTTGGAATACACTTTTCTCACTCAGCGGGGGTACTACCCTGACTCTCCCGATAAAGAAAACCAAGATAGTTTCTGCATTAGTACACAACTCCAAGGTAACCCCAATGTCCATTTCTTTGGCGTCTATGATGGGCACGGTCAATTTGGTAGCCAGTGCTCAAATTTCGTTAAGGATAGGCTGGTAGAGAAGTTGGCGAAGGACCCGGTATTGTTGGAGGACCCTGTCCAAGCTTACAATTCTGCATTCTTGGCAACGAACCAAGAATTACGTAGTAGTAGTGAGATTGATGATTCAATGAGTGGCACCACCGCGATAACGGTGCTTGTCATTGGTGACACCCTTTATGTTGCTAATGTTGGTGATTCGAGAGCGGTTCTGGCTGTTAAGGATGGGAACCGCATTGTTGCGGAGGACTTGTCCTCTGATCAGACGCCTTTTCGGAGAGATGAATATGAGAGAGTGAAGCTTTGTGGAGCAAGGGTGTTGAGTGTTGATCAGGTGGAAGGGCTCAAGGATCCAGATATCCAGAATTGGGGTGATGAAGAGAGTCGGGGTGGTGATCCTCCCAGATTGTGGGTTCCTAATGGGATGTATCCAGGAACTGCTTTTACAAGGAGTATAGGGGATAGTTTGGCAGAGACAATTGGTGTCACTGCTATTCCTGAGGTGAAAACTGTTCGGCTTACACCTGATCATCTTTTCTTTGTTGTGGCAAGTGATGGCATATTTGAATTCTTGACAAGCCAAACTGTTATTGATATGGCTGCAAGCTATACGGATCCTCGTGATGCATGTGCGGCTATTGCAGAAAAGTCATATAAACTATGGTTGGAACTTGAGAACAGGACGGATGATATAACAATTATCATTGTTCAGATCAAAGGTCTCTCTAATTCAGGTACATCTGGAGTTGGATCAGATGAGGTCAATGTTGGCGCTGTAATGAATTCCAGTACGGGAACTCCTGAGATACCTGCTGCCCATGAATCAGATGTTTATCGTTCTGTCAAAACCAGTTTCCCTGAGTTGCACTCCTGTCAGCCTGTCGCTTCAGTGATGAGCCCAGCCATAGAGGTTCACTCTCCAGCATGTCCAAGACCAATTGAATGA 1269 0.4657 MGCVHGRCCCGERSSSEDGSRDYRETGFIRGHRKSILAQRSLKRAPVPSHNFILEYTFLTQRGYYPDSPDKENQDSFCISTQLQGNPNVHFFGVYDGHGQFGSQCSNFVKDRLVEKLAKDPVLLEDPVQAYNSAFLATNQELRSSSEIDDSMSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRIVAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGLKDPDIQNWGDEESRGGDPPRLWVPNGMYPGTAFTRSIGDSLAETIGVTAIPEVKTVRLTPDHLFFVVASDGIFEFLTSQTVIDMAASYTDPRDACAAIAEKSYKLWLELENRTDDITIIIVQIKGLSNSGTSGVGSDEVNVGAVMNSSTGTPEIPAAHESDVYRSVKTSFPELHSCQPVASVMSPAIEVHSPACPRPIE* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00200 422 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 50 348 - -
Lapu3g00200 422 ProSiteProfiles PPM-type phosphatase domain profile. 55 346 IPR001932 -
Lapu3g00200 422 Gene3D - 54 348 IPR036457 -
Lapu3g00200 422 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Lapu3g00200 422 SMART PP2C_SIG_2 71 346 IPR001932 -
Lapu3g00200 422 SMART PP2C_4 51 344 IPR001932 -
Lapu3g00200 422 Pfam Protein phosphatase 2C 77 324 IPR001932 -
Lapu3g00200 422 SUPERFAMILY PP2C-like 47 348 IPR036457 -
Lapu3g00200 422 CDD PP2Cc 71 346 IPR001932 -
Lapu3g00200 422 PANTHER PROTEIN PHOSPHATASE 73 345 IPR015655 GO:0004722|GO:0006470
Lapu3g00200 422 MobiDBLite consensus disorder prediction 225 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00200 Lapu-Chr3 2174207 2178189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00200 1 351 PP2C-type Phosphatase Gene Family AT3G06270 70.538 2.30e-178 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00200 - - gmx:100797866 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00200 3 2174207 2178189 Lapu3g00200 3 2174207 2178189 ECH
Lapu3g00200 3 2174207 2178189 Lapu6g01526 6 15021487 15025645 PCT