Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00175 ATGAACATGATGTCGGTATCAGCGGTGTGCAAGGCGGTGGCGAGTTTCAACCCGGGGGTGACGATGGAGAGACTGTCGTTGTTCAGGCAGCGAAACAAGGAAAAGGTTGTGGTGATAATGGGAGCAACGGGGACAGGAAAGTCAAAGCTCGGGATAGACCTTGCCACGCACTTCCCACCAGCGGAGATAGTCAACTCCGACAAAATGCAAGTGTACCAGGGCCTGGACATCACCACCAACAAAGTCACAGAAGAGGAGTGCCGAGGGGTCCCACACCATCTCCTAGGCACGGTCCAACCCAACATGGATTTCAGTGCCAACGACTTTTGCCACCACGCCACCCTCGCCGTTGGCTCCATTTTGAAACGCCACGGGTTACCCATCATTGCGGGTGGCTCCAATTCTTTCCTCGACGCCTTGGTCAACCACTACCCTGACTTTCGGTTGCGCTACCACTGTTTGTTCCTCTGGGTCGACGTCTCCCTCCCGCTGCTCCATTCCTCCCTCTCCGCACGTGTGGACCGCATGATCCGCGCCGGCCAGGTCGACGAGGTTCGACCCTTTTTCCACTACCACAACCACGACTACAGCGTAGGGATTCGAAAGGCCATTGGCGTCCCTGAGTTTCATTCCTTTTTCCAAGCCGAAGCCGACGGAGCCGACCAGAAAACCAAGGAGAAGCTCCTCCAGGCTGCCATTGCCTCCATCAAAATCAACAACTGCAACCTCGCCACCCGACAGCTCCACAAGATTCACCGCCTCCACGCCATTTTCAAACGGAACATGCACCGCCTCGACGCCACCGAGGTTTTCCTCCGGAGCACTCCCCAAGAAGCAGAGCAAGCGTGGGAGGATCACGTTCTATCAAAAAGCAGAAGGATTCTTCACAACTTCCTCTACGACGACACGCATGTTGATGTTGCTCTTGCTTCTGTCATTGCTTCTTCGCCGCCACCCATGGCCGCCGCCGCAACTCACTAG 981 0.5596 MNMMSVSAVCKAVASFNPGVTMERLSLFRQRNKEKVVVIMGATGTGKSKLGIDLATHFPPAEIVNSDKMQVYQGLDITTNKVTEEECRGVPHHLLGTVQPNMDFSANDFCHHATLAVGSILKRHGLPIIAGGSNSFLDALVNHYPDFRLRYHCLFLWVDVSLPLLHSSLSARVDRMIRAGQVDEVRPFFHYHNHDYSVGIRKAIGVPEFHSFFQAEADGADQKTKEKLLQAAIASIKINNCNLATRQLHKIHRLHAIFKRNMHRLDATEVFLRSTPQEAEQAWEDHVLSKSRRILHNFLYDDTHVDVALASVIASSPPPMAAAATH* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00175 326 FunFam Adenylate isopentenyltransferase 5, chloroplastic 162 262 - -
Lapu3g00175 326 Pfam IPP transferase 70 145 - -
Lapu3g00175 326 Pfam IPP transferase 150 249 - -
Lapu3g00175 326 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 189 IPR027417 -
Lapu3g00175 326 Gene3D - 33 299 IPR027417 -
Lapu3g00175 326 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 162 262 - -
Lapu3g00175 326 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 33 298 IPR039657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00175 Lapu-Chr3 1961070 1962294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00175 150 304 C2H2 Transcription Factor Family AT2G27760 28.177 3.56e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00175 K10760 - gmx:100782474 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00175 3 1961070 1962294 Lapu6g01555 6 15361580 15363649 PCT