Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00171 ATGGGGAAAGTGCAAGGTTTTAGTCTTCTATCTTTTGGGGGCTGCTTTGATGGTTGTCGAGATCACACTCAAGGTTCTGGATATGGAACGAGGATATGGAACCTCAGTGATCGACCAGTGGAGCTGCAAATAAGGGTGGGATCAATACTGAAGAAGATTCACACGTTGAAGCCAGGGTCTTCTAAAAGACTGAAATGTAAAAGCATATATAAGGCTTACATGCCTGGAAGGAGTGGCAGTGTTGGAGGGAGCTTGAAGAGTTTATTGTATTACTATGATGAAACATGTCACCCTTATATTTGGATTCATGACACAGGGTGTCATTCCTTAAGGATGGCTAAGCAGCAATATATTAGCCTTGAGGATCTGAGGGATTCTTCAGAGATCAAAGTCTTCTGGGATCATCAGAGAGCACCAGCTCCACAAGGTTACTTTATCACCTCAACCAACCCTTCTGCTTCTGCTGCCTCTACCACCACCAGCTATGTGGGTCCTCCTCCACAGTATTACCCAAATGGCTACACTGCCAATTCTGTGATGCTTCATCAGCAGCCGTTCATTACTATCTTCTACTTAGCCAAAGAAGAAGAAAAATGTAGGTTTAATCCGCTATTTCCTGATTTGTTTGAGCCAATCACATTCCCCTTTCAAAAAGGGGCTGGCCAGAAATTTTGTCAGCCTTCAGGAACAGGCATTGACCTAGGCTTTTTTGAGTTGGATGATCTTTCTCGACCCTCACCCGGAGAAGATGTATTTCCCCTTGTCATATGTGCTGAATCTAATAGTATTTCTGTTTTGGATGCATCCCCTCACATGCAAATAACTCAAGCTGTCTTAGAGAAAAGCAATGGTATTGGTCCTTTCCAGGTAAAAGTAGTTAGGCAGATTCTGTGGATTGATGATGTTCGTTATGAGCTCAGAGAGTTATATGGAATAGGAAGTTCAGCAACAGCAGATTTTGATGACAATGATCGCGGGAAGGAGTGTGTAATATGCATGACTGAACCCAAGGACACTGCTGTCTTGCCCTGCCGACATATGTGTATGTGCAGTGACTGTGCTAAAGCTTTGCGGTTTCAATCAAATAAGTGTCCTATATGCCGTCAACCTATTGAGGAACTTATAGAGATCAAGATAAACAATGGCAATCAATGA 1155 0.4303 MGKVQGFSLLSFGGCFDGCRDHTQGSGYGTRIWNLSDRPVELQIRVGSILKKIHTLKPGSSKRLKCKSIYKAYMPGRSGSVGGSLKSLLYYYDETCHPYIWIHDTGCHSLRMAKQQYISLEDLRDSSEIKVFWDHQRAPAPQGYFITSTNPSASAASTTTSYVGPPPQYYPNGYTANSVMLHQQPFITIFYLAKEEEKCRFNPLFPDLFEPITFPFQKGAGQKFCQPSGTGIDLGFFELDDLSRPSPGEDVFPLVICAESNSISVLDASPHMQITQAVLEKSNGIGPFQVKVVRQILWIDDVRYELRELYGIGSSATADFDDNDRGKECVICMTEPKDTAVLPCRHMCMCSDCAKALRFQSNKCPICRQPIEELIEIKINNGNQ* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00171 384 SUPERFAMILY RING/U-box 328 374 - -
Lapu3g00171 384 Pfam Zinc finger, C3HC4 type (RING finger) 327 373 - -
Lapu3g00171 384 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Lapu3g00171 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 378 IPR013083 -
Lapu3g00171 384 PANTHER MAHOGUNIN 186 378 IPR045194 GO:0061630
Lapu3g00171 384 SMART ring_2 329 367 IPR001841 -
Lapu3g00171 384 CDD mRING-HC-C3HC5_MGRN1-like 327 368 IPR045195 -
Lapu3g00171 384 FunFam probable E3 ubiquitin-protein ligase LOG2 313 378 - -
Lapu3g00171 384 ProSiteProfiles Zinc finger RING-type profile. 329 368 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00171 Lapu-Chr3 1906238 1911864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00171 187 384 C3H Transcription Factor Family AT3G06140 64.532 3.88e-82 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00171 - - gmx:102665712 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00171 3 1906238 1911864 Lapu3g00171 3 1906238 1911864 ECH
Lapu3g00171 3 1906238 1911864 Lapu6g01558 6 15410147 15410629 PCT