Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00169 ATGGAACAATTCGACGAATGCATGAAGAAGCAAATAGAATTGTTTGCACGGGGTTGGCATTTATGTCAAGCCTACAGAAAGGACAAAATTCCTTGCAAAATCGACGAGGGTCTGTATTTGGGTTCGATTGGCGCTGCTGTTAACAAGGCTACTTTGAAAGACCATAATATTACTCACGTTTTGACTGTGGCTGGTAGAATAGGACCTGTTCATCCTGATGATTTTGTCTATAAAATTATAGATGTTGTTGACAAAGACGAGGAAGACTTGAAACAATACTTCAATGAGTGTTTTGATTTTATTGATGAAGCCAAAAGACTCGGTGGAGGTGTTTTGGTTCACTGTTTCGCTGGAAGATCAAGGAGTGTGACTATAGTTGTGGCATATCTCATGAGGACTCGTGGAATGAGCCTTTTTGAAGCTCTGCAACATGTAAGTAGCATACGACCAGTAGCACGTCCCAATCAGGGTTTCATTTGTCAGCTGGAGGACTTCGAAAAGTCTCTTCAAGGTGCCTCTAAGTCACATTAG 531 0.4143 MEQFDECMKKQIELFARGWHLCQAYRKDKIPCKIDEGLYLGSIGAAVNKATLKDHNITHVLTVAGRIGPVHPDDFVYKIIDVVDKDEEDLKQYFNECFDFIDEAKRLGGGVLVHCFAGRSRSVTIVVAYLMRTRGMSLFEALQHVSSIRPVARPNQGFICQLEDFEKSLQGASKSH* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00169 176 FunFam Dual specificity phosphatase 12 32 176 - -
Lapu3g00169 176 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 31 173 IPR029021 -
Lapu3g00169 176 Pfam Dual specificity phosphatase, catalytic domain 38 167 IPR000340 GO:0008138|GO:0016311
Lapu3g00169 176 CDD DSP 31 164 - -
Lapu3g00169 176 Gene3D Protein tyrosine phosphatase superfamily 32 176 IPR029021 -
Lapu3g00169 176 ProSiteProfiles Dual specificity protein phosphatase domain profile. 30 171 IPR020422 GO:0006470|GO:0008138
Lapu3g00169 176 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 92 150 IPR000387 GO:0016311|GO:0016791
Lapu3g00169 176 SMART dsp_5 30 168 IPR020422 GO:0006470|GO:0008138
Lapu3g00169 176 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 21 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00169 Lapu-Chr3 1880529 1883248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00169 8 171 Protein tyrosine phosphatase (PTP) family AT3G06110 55.152 6.37e-58 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00169 - - gmx:100306342 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00169 3 1880529 1883248 Lapu3g00169 3 1880529 1883248 ECH