Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00160 ATGGCCAATTTTTCCTCTCCCTCACCTCTTTCTCTGTCACACATTCTAACTCCGTCAGCCTCTGCGGCTTTCGACAACACTTCCGATGACGCCTGCAGCATATGTCTTGAGCCCTTCAGTACCCATGACCCCGCCACCATTACCAGTTGCAAACATGAATATCATATGCACTGTATTCTTGAATGGTCGCAGAGAAGCAAAGAATGCCCAATATGTTGGCGGTTACTCGTCTTGAAAGACACTGCCAGCCAAGAGCTTCTAAATTCAGTGGAGGCTGAAAGAGACTTAAGTTCAAGAACTGTACACCCAGGTGCATTCACTAATTATCTTGAACGGCTTAACAATGACCATGATGATACTGACGAGTCTGGTTTTGATGAACAACTTATGCAGCACATAGTTACTGCTCCAAGTAGAGCTCGTTATATCTGCAGACGTGAAAGGCAAAGATCCCCTGAAGCAGGTCCTTCAGATGTTCTTGCTTTTAGCTCTTCTATGCATGCATCAGGGATACAGCCAACGTTTACAGCTTCACCCTCTGGGGGCACTTCACCAACCTCTGGTGTACCTTCTGTTGCTCACGATCAACGTCCAACATCTGCCTTTCCCTCTGTTGGCATGGTTACAACAAATACTTCTGAGAGTGACATGCATTCTTCCAAACCGAGAGTTATCTATAGCCAGCCATCATCTGAGAATGCAAGGAGACTAAAGGCTTCTGAGATGTTTTCCATCCCCGAGTCCATCAAATCCAAACTTTCTGCTGCTTCAGCCAGATGCAAAGAATCAATTTCCAAAAATACTCGTGTTCTTAAAGAGAAGTTGATTGCACGTAATGCATCAGTGAAAGAATTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCATGGCCGGTGTTGTACGAATGTTTGAACGCCTTGATCTTACCTCAAAACGGTCATCATCTCCTGCCAACCTTATCTGTACTGGGGGGACTTCAGGCCTGCCTACAAAAGAGAAGTTTGTTCGAGAGAGTGGAGTTGTGGTTGTGGATGCTACTTCAAATCCTTCCTGA 1056 0.4555 MANFSSPSPLSLSHILTPSASAAFDNTSDDACSICLEPFSTHDPATITSCKHEYHMHCILEWSQRSKECPICWRLLVLKDTASQELLNSVEAERDLSSRTVHPGAFTNYLERLNNDHDDTDESGFDEQLMQHIVTAPSRARYICRRERQRSPEAGPSDVLAFSSSMHASGIQPTFTASPSGGTSPTSGVPSVAHDQRPTSAFPSVGMVTTNTSESDMHSSKPRVIYSQPSSENARRLKASEMFSIPESIKSKLSAASARCKESISKNTRVLKEKLIARNASVKELSKGVQREMNAGMAGVVRMFERLDLTSKRSSSPANLICTGGTSGLPTKEKFVRESGVVVVDATSNPS* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00160 351 ProSiteProfiles Zinc finger RING-type profile. 32 72 IPR001841 -
Lapu3g00160 351 FunFam E3 ubiquitin-protein ligase RHF1A 17 84 - -
Lapu3g00160 351 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 26 80 - -
Lapu3g00160 351 MobiDBLite consensus disorder prediction 170 232 - -
Lapu3g00160 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 88 IPR013083 -
Lapu3g00160 351 Pfam Ring finger domain 31 72 IPR001841 -
Lapu3g00160 351 SUPERFAMILY RING/U-box 24 79 - -
Lapu3g00160 351 SMART ring_2 32 72 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00160 Lapu-Chr3 1805776 1809047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00160 26 80 C3H Transcription Factor Family AT4G00335 41.818 2.82e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00160 K19043 - gmx:100785684 465.307