Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00159 ATGGACACCAGCACGCTCTCACTGTTGTCGCCTCTTCCCTCTCTGCGTTTTCTTTCATCTGAAAAACCAGCTCCCACTTCTTACGTCCTTACTTCTCACAACCATTTTCTCAAACACTTCTCCTACACTACTAACCTTAATCGCACCTCCAAATTCAGAACTCCACAAGCCGTTCTCAATACCTCTCCCATAACCCCTACAGCGCTCACCCCTCCCACTCTTAGAGAATTATGCCAAGATCACGTTCCTGAACATATATTGCAAAGGATGGAAGAGATTGGATATGCAATGCCCACAAATATCCAGAGGGAAGCTTTGCCTTACCTTTTTTCCGGGCGTGACTGCATTCTTCATGCTCAGACAGGTTCTGGGAAGACCCTCACATACCTGCTTTTGATTCACTCCATCATCAATGCTGCAAAATCCTCTGTGCAAGCCCTAGTTGTTGTGCCCACCCGGGAACTCGGAATGCAAGTCACTAAGGTCGCTAGGACATTGGCTGCAAAGCCAACTGGAGTCGTTGGGGAGCACAAGTCATGTTCCATCATGGCTCTGCTAGATGGAGGAACACTGAAAAGACACAAGACTTGGTTAAAGAAAAGACCCCTTTCCTACTCCTTTTGCTCGTTTAACTTTCTCAAATTTCAGGCAGAGCCACCAACAGTAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGGCATACTTTTTCGCTTGAAACTGTGCGTGTGCTGATTGTTGATGAGGCAAGAGTTGACTGTATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTTCGAAAAATTTTGACTTCATATTCATCTTGCAATAACCGTCAGACAGTCTTCGCCAGCGCATCTATACCACAGCATAACCGATTTATTCATGACTCTGTGCAGCAAAAATGGACAAAGAGAGATGTGATCCATATCCATGTCAGTGCAGTCGAGCCCATGCCATCTCGCCTATATCATAGATTTGTAAGATGTGAAACCAAAAGAAAATTACAAACCCTGTTATCCTTAATACAATCTGATGCACCTGAGTCTGGCATTATATTTGTTGCTGAGCAGTCTGAGAAGTCCAAAAAGGCTGGAAAGCCTCCATCAACATCCCTTCTGATTGATTTTTTGAAGGTATCATACCAAGGTGGTTTAGATACCCTCCTACTTGAAGACAAAATGAATTTCAATTCACGAGCAGCTTCACTGTTGGAGGTTAGAAAAGGAGGTGGCTATCTTCTTGTAGCAACAGATATAGCTGCTAGGGGAGTTGACCTTCCAGAAATGTCTCACATTTACAACTTTGATCTGCCAAGGACTGCTATAGATTATCTTCATCGAGCAGGCCGAACATGTAGAAAACCCTTTTCTGACATCAATTGTACTGTTACCAGCATTATTGTTCCAGATGAGCGATTTGTTCTTCAGAGATATGAAAATGAGTTGATGTTTAACTGTGAAGAGCTTATTATTCCATAA 1485 0.431 MDTSTLSLLSPLPSLRFLSSEKPAPTSYVLTSHNHFLKHFSYTTNLNRTSKFRTPQAVLNTSPITPTALTPPTLRELCQDHVPEHILQRMEEIGYAMPTNIQREALPYLFSGRDCILHAQTGSGKTLTYLLLIHSIINAAKSSVQALVVVPTRELGMQVTKVARTLAAKPTGVVGEHKSCSIMALLDGGTLKRHKTWLKKRPLSYSFCSFNFLKFQAEPPTVVVATVGSLCQMLERHTFSLETVRVLIVDEARVDCIFNSSKQVSSLRKILTSYSSCNNRQTVFASASIPQHNRFIHDSVQQKWTKRDVIHIHVSAVEPMPSRLYHRFVRCETKRKLQTLLSLIQSDAPESGIIFVAEQSEKSKKAGKPPSTSLLIDFLKVSYQGGLDTLLLEDKMNFNSRAASLLEVRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAIDYLHRAGRTCRKPFSDINCTVTSIIVPDERFVLQRYENELMFNCEELIIP* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00159 494 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 336 494 IPR001650 -
Lapu3g00159 494 Gene3D - 322 492 IPR027417 -
Lapu3g00159 494 SMART helicmild6 373 457 IPR001650 -
Lapu3g00159 494 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 106 307 IPR014001 -
Lapu3g00159 494 Pfam Helicase conserved C-terminal domain 336 455 IPR001650 -
Lapu3g00159 494 SMART ultradead3 94 328 IPR014001 -
Lapu3g00159 494 Pfam DEAD/DEAH box helicase 99 291 IPR011545 GO:0003676|GO:0005524
Lapu3g00159 494 CDD DEADc 86 291 - -
Lapu3g00159 494 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 63 484 - -
Lapu3g00159 494 CDD SF2_C_DEAD 326 455 - -
Lapu3g00159 494 Gene3D - 41 309 IPR027417 -
Lapu3g00159 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 459 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00159 Lapu-Chr3 1798921 1804061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00159 84 479 Eukaryotic Initiation Factors Gene Family AT3G13920 25.377 4.24e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00159 - - gmx:100786205 798.89