Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu3g00148 | ATGATGCAGCCAGGACCCGGCATGGCCCAACAACCCAACCAGCAATACCCACAACAGCAGCAGCAGCAGCAGCAACAACCCTACATGATGATGCCGCCGCAGCCGCAGCCCCCTCAGATGTGGGCCCCTTCGGCCCAGCCTCCACCGCAATCGGTGGCTCCTCCGCAGCCCACCAGCGCCGATGAGGTCCGTACCCTCTGGATCGGTGATTTGCAGTACTGGATGGACGAAAACTACCTCTACACGTGTTTCGCACATACCGGCGAGGTAGCTTCAGTTAAAGTCATTCGGAACAAACAAACTAGTCAATCCGAGGGATATGGGTTTATTGAGTTTACTAGTCGTGCTGGTGCTGAGAGAATCCTTCAAACATACAATGGAACCATTATGCCAAATGGGGGTCAGAACTTCAGATTGAACTGGGCTTCATTTAGTGCGGGAGATAGGCGTCATGATGACAGCCCAGATCACACTATATTTGTTGGAGACCTGGCTGCAGATGTTACAGATTATCTTCTGCAGGAGACATTTCGGGCACGATATCCCTCGGTTAAGGGTGCCAAAGTTGTAATTGATAGGCTCACTGGCCGGACAAAGGGTTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAGGTTAGGGCTATGACTGAAATGCAAGGGGTTCTTTGTTCAACAAGGCCCATGCGAATTGGACCTGCCTCTAATAAAAACCCTAGCACACAGTCCCAGCCAAAAGCATCATATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACAACTATTTTTGTCGGCAATTTGGATCCTAATGTCACCGATGACCATTTGAGACAAGTTTTTGGGCAGTATGGAGAGTTAGTTCACGTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAGGAGCTGCGCGGAAGAGGCTCTACGGGTTTTAAACGGTACACTTTTGGGTGGACAAAATGTTCGGCTTTCATGGGGCCGAAGTCCTTCAAACAAACAAGCCCAACCAGATGCAAATCAGTGGAATGGCAGTGGTGGTTACTATGGATATGCTGCTCAGGGTTATGAAAATTATGGTTATGCTCCTGCTGGACAAGACCCCAATATGTATGGCAGTTATCCGGGCTATGCAAATTACCAACCTCCTCAGCAACAACAGCAAATAGGATATAGCTAA | 1200 | 0.4875 | MMQPGPGMAQQPNQQYPQQQQQQQQQPYMMMPPQPQPPQMWAPSAQPPPQSVAPPQPTSADEVRTLWIGDLQYWMDENYLYTCFAHTGEVASVKVIRNKQTSQSEGYGFIEFTSRAGAERILQTYNGTIMPNGGQNFRLNWASFSAGDRRHDDSPDHTIFVGDLAADVTDYLLQETFRARYPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPSTQSQPKASYQNPQGAQNEHDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDANQWNGSGGYYGYAAQGYENYGYAPAGQDPNMYGSYPGYANYQPPQQQQQIGYS* | 400 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu3g00148 | 399 | Gene3D | - | 244 | 369 | IPR012677 | - | |
Lapu3g00148 | 399 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 266 | 329 | IPR000504 | GO:0003723 | |
Lapu3g00148 | 399 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 159 | 222 | IPR000504 | GO:0003723 | |
Lapu3g00148 | 399 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 66 | 131 | IPR000504 | GO:0003723 | |
Lapu3g00148 | 399 | MobiDBLite | consensus disorder prediction | 228 | 263 | - | - | |
Lapu3g00148 | 399 | SUPERFAMILY | RNA-binding domain, RBD | 27 | 145 | IPR035979 | GO:0003676 | |
Lapu3g00148 | 399 | MobiDBLite | consensus disorder prediction | 1 | 59 | - | - | |
Lapu3g00148 | 399 | SMART | rrm1_1 | 65 | 140 | IPR000504 | GO:0003723 | |
Lapu3g00148 | 399 | SMART | rrm1_1 | 158 | 232 | IPR000504 | GO:0003723 | |
Lapu3g00148 | 399 | SMART | rrm1_1 | 265 | 332 | IPR000504 | GO:0003723 | |
Lapu3g00148 | 399 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Lapu3g00148 | 399 | FunFam | Polyadenylate-binding protein RBP45C | 149 | 241 | - | - | |
Lapu3g00148 | 399 | Gene3D | - | 6 | 148 | IPR012677 | - | |
Lapu3g00148 | 399 | MobiDBLite | consensus disorder prediction | 231 | 263 | - | - | |
Lapu3g00148 | 399 | FunFam | Polyadenylate-binding protein RBP45C | 242 | 370 | - | - | |
Lapu3g00148 | 399 | CDD | RRM1_SECp43_like | 65 | 145 | - | - | |
Lapu3g00148 | 399 | CDD | RRM2_SECp43_like | 156 | 235 | - | - | |
Lapu3g00148 | 399 | FunFam | Polyadenylate-binding protein RBP45 | 5 | 148 | - | - | |
Lapu3g00148 | 399 | MobiDBLite | consensus disorder prediction | 379 | 399 | - | - | |
Lapu3g00148 | 399 | MobiDBLite | consensus disorder prediction | 385 | 399 | - | - | |
Lapu3g00148 | 399 | SUPERFAMILY | RNA-binding domain, RBD | 142 | 244 | IPR035979 | GO:0003676 | |
Lapu3g00148 | 399 | Gene3D | - | 149 | 243 | IPR012677 | - | |
Lapu3g00148 | 399 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 55 | 340 | - | - | |
Lapu3g00148 | 399 | SUPERFAMILY | RNA-binding domain, RBD | 248 | 362 | IPR035979 | GO:0003676 | |
Lapu3g00148 | 399 | MobiDBLite | consensus disorder prediction | 30 | 55 | - | - | |
Lapu3g00148 | 399 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 64 | 144 | IPR000504 | GO:0003723 | |
Lapu3g00148 | 399 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 157 | 236 | IPR000504 | GO:0003723 | |
Lapu3g00148 | 399 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 264 | 336 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu3g00148 | Lapu-Chr3 | 1700457 | 1705795 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu3g00148 | 66 | 346 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 25.784 | 3.26e-25 | 105 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu3g00148 | - | - | gmx:100814743 | 677.167 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lapu3g00148 | 3 | 1700457 | 1705795 | Lapu6g01587 | 6 | 15717126 | 15721570 | PCT |