Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00145 ATGTTGAAGACGAAAGCATTCCAAGGCGTGGACGTGTTCATGTCGCGAAACCTCGTGCCGCCGGAAGTCTTCGACGCGCTGCAGGATGCCGTTAAAGATAACGGCGCTCAACTCCACCTCTGCTGCGACCCCTCCCGTAATGGCCCCAACGATTACCACATCATTGCTTCCGGCAAACACGAGAAGTTCGATGATCTCAAATCCAAGGGCTGCAAATTGCTAGGTCCTAGATGTGTTCTCTCGTGTGCCAAAGGTGGAAGGTCTCTGCCTAAACGAGGTTTCACTTGTTGCCTTGCCATGGACGGCGTCAAAGTACTTGCTTCTGGCTTTGACACAGAAGAGAAGGTTAAGATAGAAGAGTTAGTGGCTGAAATGGGGGGAGTTCTACACACTAAAACATCGTTGGATTTGAACTTTGTCATTGTGAAAAATGTTTTAGCTGCAAAGTACAAGTGGGCTTTGAATGAATTGAAGAAACCAATAGTCACGTATGAATGGTTAAAACAATGCTCGGAGGAGCATCGAGTTGTTCCTCAAGAGTCATACAAGGTCCTTCCTTTCTCTGGGTTAAAGATTTGTGTTACTGGAATTCCAGCAGATGTTCGTAAAGAGATGGAGAAGCTTATTTTACAAAATGGTGGAAAATACTCTGCGGAATTGACAAAGAGTTGCACACATTTGATTTCTGAGGCTCCTGAAGGTGACAAGTATAAGGTAGCAAAACGATGGGGCCACATTCACATTGTGATAAGGAAATGGTTTGATCAATCTATTGCTCGAAGAGCATGTCTGAATGAGGAGTTCTTCCCTGTTCAGCATGGATCTGTATATTCACATAAAGTCACTAGGGACTTAAGAATGCAACATAGCCAAGAAAAGGATATTGGGAAATTGCAATCTGCGGCATCCTCAGGTGCTACAGATTCAAATGTGCAAGTTTCTTTTGCTGAGTTTATGGATAGAGATCAAGAAACTATGCAATCAGAACATATGTCCTCTACTTCACAAAGTCATATAATTGCTAAGGAGGCAGATGCTGAACCTCCATTGCAGACCACTGGTGAATTGAACTTTGACGGTGTTGTTGCTGATGATTCTGAATCTGATGATAATGACTTGTACTTATCAGAATGCAGAATATTACTTGTTGGTTTTGAAGCTTTAGAAATGCGGAAACTAATTAGTATTGTGCGTAAAGGTGGAGGCTCCCGGTATATGTCTTTTAATGACAAATTGACACACATAGTAGTTGGGAATCCTACTGAAATGGAAAAGAAGGATGTGAGGAGTCTTGCTGCTTTAGGTGTAATTTATGTTGTTAAAACCACATGGCTTGAAGATTGTGACCATAAAAAGAAAGAAGTCCCTGTTCTTAGGAGACACATTGCATATGATCTACTTCATCCGAAAGCACCCTTGGTAAAAGGAGCAGTAACAGGAAGCACATCTATGGATCACAGTAAAAGCTCCAGCTGTCAACAAAGTTCGCATCAGGTGGACTTCGAAATCGTGAAGCCAGAATCTTTTGAGAAAAGACAAGAAGAGATAAAGGATATGGATATAAATGGTCATTCACTCCGTAAAGCAAATTGTAGAACTATGTTGCCAAATCAACTTCCTGATAATAAATTGAGTGCAGAAAGAATGAGCCAACATGACTTAAGTGTTCAATATAAAAAATCAGCAAATGTTTTCAGAGGGAAACTATTTTGTTTCTCAAATTTGTTTCCTGAAGAAAAGAGAGGTGAGATTGTTCAATGGATAAGTCAAGGGGGAGGGGAGGTAATAAGTGGGCAAACAAAACAGATTGTCCACTATACTGTTGAGTGTCATGGTGTAACACCCACGTTGACAGGTGATTCCAAGAGTTTGTATATTTCCAGTCATTGGATACGATCTTGTTTGGAGGCTGGATCCTTGCTGGATGTTGACAGTCACATTCTTTATTCTCCACTTCCCTGCCGTGTTCCCTTGCCTGGATTTGAAAGATTTCGGTTTTGTGTTTCACAGTATGAGGAGAAAGACAGAAATCTCCTAAGAAACTTGTGTTTTGTTCTAGGAGCTAAATTTGGGGAGAAGTTAACTAAGAAGGTTACGCATTTGTTGTGTAAATTCACCGATGGACCCAAGTATGAATATGCTCGTAAATGGGAGATTCAATCAGTTACATCTGCATGGATATTTGAATGCGTCAAACAGAATGGAATTGTTGCCATTGATAAATTTTTACCAAAAGAAGTAACTGCTCAGGAACGAGAGGCAGGAATTTGCACCGTGAGTCAATTTCCTACCCAGGCTGCTCAAATGATAAGTGACATACCCTCTCAGTTGTCAAGTCAATCACAAATTTTGAGAGGCATCACAAATAAAAACGTGGGTAGTAGAGTTGATAATCATGAGACCGATTTTAAGAAACCAAGTATTTATAGCAAAAAGGCAAGGCTTGTGGAAGAACCTTTCCCTATTAATAAGATGCCTTCGGCGTCAAATTCGGGTATTCATGCCTATGAAAAGAATTTTTCTGAAGACAATATGCTAATAGATGCTGAGGAGGTTTGTCTTGCTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACTAGTAAGATGCATGGTCAGATGTCCCCGGCACAGACAGGGTGTCAAAGAGGTATTTACCCATCTGATCGTTCAGTCCTTGGTGAAGATAATTCCAATCCTCATACCATCTTTGGGTTGTCTAAACACTGGTTAAACAGGTTGGCTCTATATTTCCCTGTTTAA 2772 0.4105 MLKTKAFQGVDVFMSRNLVPPEVFDALQDAVKDNGAQLHLCCDPSRNGPNDYHIIASGKHEKFDDLKSKGCKLLGPRCVLSCAKGGRSLPKRGFTCCLAMDGVKVLASGFDTEEKVKIEELVAEMGGVLHTKTSLDLNFVIVKNVLAAKYKWALNELKKPIVTYEWLKQCSEEHRVVPQESYKVLPFSGLKICVTGIPADVRKEMEKLILQNGGKYSAELTKSCTHLISEAPEGDKYKVAKRWGHIHIVIRKWFDQSIARRACLNEEFFPVQHGSVYSHKVTRDLRMQHSQEKDIGKLQSAASSGATDSNVQVSFAEFMDRDQETMQSEHMSSTSQSHIIAKEADAEPPLQTTGELNFDGVVADDSESDDNDLYLSECRILLVGFEALEMRKLISIVRKGGGSRYMSFNDKLTHIVVGNPTEMEKKDVRSLAALGVIYVVKTTWLEDCDHKKKEVPVLRRHIAYDLLHPKAPLVKGAVTGSTSMDHSKSSSCQQSSHQVDFEIVKPESFEKRQEEIKDMDINGHSLRKANCRTMLPNQLPDNKLSAERMSQHDLSVQYKKSANVFRGKLFCFSNLFPEEKRGEIVQWISQGGGEVISGQTKQIVHYTVECHGVTPTLTGDSKSLYISSHWIRSCLEAGSLLDVDSHILYSPLPCRVPLPGFERFRFCVSQYEEKDRNLLRNLCFVLGAKFGEKLTKKVTHLLCKFTDGPKYEYARKWEIQSVTSAWIFECVKQNGIVAIDKFLPKEVTAQEREAGICTVSQFPTQAAQMISDIPSQLSSQSQILRGITNKNVGSRVDNHETDFKKPSIYSKKARLVEEPFPINKMPSASNSGIHAYEKNFSEDNMLIDAEEVCLAVPDVAAAIEDLLEQTSKMHGQMSPAQTGCQRGIYPSDRSVLGEDNSNPHTIFGLSKHWLNRLALYFPV* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00145 923 Pfam BRCA1 C Terminus (BRCT) domain 372 448 IPR001357 -
Lapu3g00145 923 Pfam BRCA1 C Terminus (BRCT) domain 100 170 IPR001357 -
Lapu3g00145 923 Gene3D BRCT domain 361 459 IPR036420 -
Lapu3g00145 923 Pfam BRCT domain, a BRCA1 C-terminus domain 562 645 IPR001357 -
Lapu3g00145 923 Gene3D BRCT domain 34 94 IPR036420 -
Lapu3g00145 923 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 9 914 - -
Lapu3g00145 923 Pfam twin BRCT domain 665 726 IPR001357 -
Lapu3g00145 923 Pfam twin BRCT domain 190 253 IPR001357 -
Lapu3g00145 923 FunFam Transcription coactivator 557 654 - -
Lapu3g00145 923 CDD BRCT 103 170 - -
Lapu3g00145 923 ProSiteProfiles BRCT domain profile. 560 648 IPR001357 -
Lapu3g00145 923 SUPERFAMILY BRCT domain 186 271 IPR036420 -
Lapu3g00145 923 CDD BRCT_TopBP1_rpt2_like 659 734 - -
Lapu3g00145 923 Gene3D BRCT domain 656 750 IPR036420 -
Lapu3g00145 923 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Lapu3g00145 923 CDD BRCT_TopBP1_rpt2_like 186 261 - -
Lapu3g00145 923 Gene3D BRCT domain 557 654 IPR036420 -
Lapu3g00145 923 ProSiteProfiles BRCT domain profile. 661 744 IPR001357 -
Lapu3g00145 923 FunFam Transcription coactivator 97 186 - -
Lapu3g00145 923 Gene3D BRCT domain 97 185 IPR036420 -
Lapu3g00145 923 SMART BRCT_7 562 638 IPR001357 -
Lapu3g00145 923 SMART BRCT_7 658 734 IPR001357 -
Lapu3g00145 923 SMART BRCT_7 184 261 IPR001357 -
Lapu3g00145 923 SMART BRCT_7 97 174 IPR001357 -
Lapu3g00145 923 SMART BRCT_7 372 452 IPR001357 -
Lapu3g00145 923 SMART BRCT_7 4 86 IPR001357 -
Lapu3g00145 923 ProSiteProfiles BRCT domain profile. 182 271 IPR001357 -
Lapu3g00145 923 SUPERFAMILY BRCT domain 657 745 IPR036420 -
Lapu3g00145 923 SUPERFAMILY BRCT domain 59 183 IPR036420 -
Lapu3g00145 923 FunFam DNA topoisomerase II binding protein 1 187 278 - -
Lapu3g00145 923 FunFam Transcription coactivator 352 462 - -
Lapu3g00145 923 ProSiteProfiles BRCT domain profile. 370 462 IPR001357 -
Lapu3g00145 923 Gene3D BRCT domain 186 272 IPR036420 -
Lapu3g00145 923 SUPERFAMILY BRCT domain 563 650 IPR036420 -
Lapu3g00145 923 SUPERFAMILY BRCT domain 370 456 IPR036420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00145 1 917 Core DNA Replication Machinery Family AT1G77320 47.934 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00145 K10728 - gmx:100804966 1561.97