Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00143 ATGGGTTGTCACGGCAGCAAGGAGAAAAAATCAAGCGCAGAATTCAGCAGTGCCTATGGATCAGGCACTCGTAGTGGCGGCAGTGGTGGTTACAACACTGTTCAACCACCACCTACCACCACTGCTGCTCAGGCTCAAACATCAGCACCACCCAAACCACAACCACAGTCAGAGGGGGTAGCGACTCCACCAAAACCGAAACTTTCTCCGACCCAGAATGCTAGGGCGGTGCAGAAACCCGACACCACGATTCTGGGGAAACCCTTTGAGGATATCAAGAAGTACTACAGTCTGGGGAGGGAACTGGGAAGAGGGCAATTCGGCATAACGTATCTGTGCACGGAGAATGCGAGCGGAATGACATACGCGTGCAAGTCGATTCTGAAGAGGAAGCTGGTGTCGAGGTCGGACAGGGAGGACATGAAGAGGGAGATTCAGATCATGCAGCATTTGTCTGGGCAGAACAACATTGTGGAGTTCAAGGGGGCGTACGAGGACAGGATGTCGGTCCACCTTGTAATGGAACTCTGCGCCGGCGGGGAGCTCTTCGACCGGATCATCGCCCAGGGCCATTACTCCGAGAGAGCCGCCGCCTCACTCTGCCGCGCCATTGTCAACGTAGTTCACATTTGCCACTTCATGGGAGTCATGCACCGCGATCTCAAGCCGGAAAATTTCTTGCTCTCTACTAAGGATGACGACGCTACACTCAAGGCTACTGATTTTGGACTCTCCGTCTTCATTGAAGAAGGGAAGGTATATCATGATATGGTTGGCAGTGCTTACTATGTTGCTCCTGAGGTATTGCGTCGTAGTTATGGAAAGGAAATAGATATTTGGAGTGCAGGCATCATTTTGTACATTCTTCTCAGTGGTGTACCGCCTTTTTGGGCTGAAACTGAAAAGGGAATATTTAACGCCATATTGGAAGGTGATCTTGATTTTGTAAGTGAACCATGGCCATCGATATCGGACAGTGCTAAAGATCTAGTCAGGAAGATGCTGACACAAGATCCAAAGAAGCGGATTACTTCTGCACAAGTCCTTGAACACCCATGGATGAGAGAAGGTGGAGAGGCATCGGATAAACCAATTGATAGTGCAGTTCTATCCAGAATGAAACAATTCAGGGCAATGAATAAGCTCAAGAAGCTAGCATTGAAGGTTATCGCTGAAAATCTATCAGAAGAGGAGATTAAAGGTCTGAAAGCAATGTTTGCAAATATGGACACTGACAATAGTGGCACAATTACCTACGAGGAATTGAAGACTGGCTTGGCTCGAATTGGATCAAGCTTGTCTGAGGCTGAAGTGAAGCAACTCATGGACGCTGCTGATGTTGATGGAAATGGGTCAATTGACTATCTTGAATTCATTTCGGCTACAATGCATAGACACAGACTTGAACGTGATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGGGTACATTACTAGAGATGAATTGGAGACTGCTATGACCCAACATGGAATGGGTGATGAAGCAACAATAAAGGAAATAATCTCCGAGGTGGATACAGATAATGATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGTGGAATGCCGCACCAGGGACAACTACTTTAA 1635 0.4697 MGCHGSKEKKSSAEFSSAYGSGTRSGGSGGYNTVQPPPTTTAAQAQTSAPPKPQPQSEGVATPPKPKLSPTQNARAVQKPDTTILGKPFEDIKKYYSLGRELGRGQFGITYLCTENASGMTYACKSILKRKLVSRSDREDMKREIQIMQHLSGQNNIVEFKGAYEDRMSVHLVMELCAGGELFDRIIAQGHYSERAAASLCRAIVNVVHICHFMGVMHRDLKPENFLLSTKDDDATLKATDFGLSVFIEEGKVYHDMVGSAYYVAPEVLRRSYGKEIDIWSAGIILYILLSGVPPFWAETEKGIFNAILEGDLDFVSEPWPSISDSAKDLVRKMLTQDPKKRITSAQVLEHPWMREGGEASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIKGLKAMFANMDTDNSGTITYEELKTGLARIGSSLSEAEVKQLMDAADVDGNGSIDYLEFISATMHRHRLERDEHLYKAFQYFDKDNSGYITRDELETAMTQHGMGDEATIKEIISEVDTDNDGRINYEEFCAMMRSGMPHQGQLL* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00143 544 CDD EFh 476 534 IPR002048 GO:0005509
Lapu3g00143 544 MobiDBLite consensus disorder prediction 12 55 - -
Lapu3g00143 544 FunFam calcium-dependent protein kinase 1 182 361 - -
Lapu3g00143 544 SUPERFAMILY EF-hand 393 533 IPR011992 -
Lapu3g00143 544 ProSiteProfiles EF-hand calcium-binding domain profile. 505 539 IPR002048 GO:0005509
Lapu3g00143 544 ProSiteProfiles EF-hand calcium-binding domain profile. 469 504 IPR002048 GO:0005509
Lapu3g00143 544 ProSiteProfiles Protein kinase domain profile. 96 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00143 544 Gene3D Phosphorylase Kinase; domain 1 98 181 - -
Lapu3g00143 544 PANTHER SERINE/THREONINE-PROTEIN KINASE 90 529 - -
Lapu3g00143 544 Gene3D - 362 536 - -
Lapu3g00143 544 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Lapu3g00143 544 FunFam Calcium-dependent protein kinase 1 98 181 - -
Lapu3g00143 544 Pfam EF-hand domain pair 402 462 IPR002048 GO:0005509
Lapu3g00143 544 Pfam EF-hand domain pair 472 534 IPR002048 GO:0005509
Lapu3g00143 544 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Lapu3g00143 544 ProSitePatterns Protein kinases ATP-binding region signature. 102 129 IPR017441 GO:0005524
Lapu3g00143 544 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Lapu3g00143 544 Gene3D Transferase(Phosphotransferase) domain 1 182 361 - -
Lapu3g00143 544 CDD STKc_CAMK 96 353 - -
Lapu3g00143 544 Pfam Protein kinase domain 96 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00143 544 MobiDBLite consensus disorder prediction 1 82 - -
Lapu3g00143 544 SMART serkin_6 96 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00143 544 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Lapu3g00143 544 ProSitePatterns EF-hand calcium-binding domain. 517 529 IPR018247 -
Lapu3g00143 544 SUPERFAMILY Protein kinase-like (PK-like) 94 362 IPR011009 -
Lapu3g00143 544 FunFam Calcium-dependent protein kinase 1 362 537 - -
Lapu3g00143 544 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Lapu3g00143 544 SMART efh_1 508 536 IPR002048 GO:0005509
Lapu3g00143 544 SMART efh_1 473 501 IPR002048 GO:0005509
Lapu3g00143 544 SMART efh_1 401 429 IPR002048 GO:0005509
Lapu3g00143 544 SMART efh_1 437 465 IPR002048 GO:0005509
Lapu3g00143 544 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00143 Lapu-Chr3 1639614 1644914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00143 1 544 EF-hand Containing Proteins AT4G04720 74.176 0.0 836
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lapu3g00143 Pkinase 1.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00143 K13412 - gmx:100816859 918.302