Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00130 ATGCGCGCTTATCCTGCAGTAATCACAGACACATACAGAACCCGAACAATACAGAATCAGACACCGAATATGGCTGAGTTGTTGGAATGGCCAAAGAAAGATAACCGTCGCATGCTCCATGTTGTCTACCGTGTTGGTGACCTTGATCGCACCATCAAGTTTTATACAGAATGCTTTGGAATGAAGCTTCTGCGGCATAGAGATATCCCGGAGGAGAAATATGCCAATGCCTTTCTTGGATTTGGCCCTGAAGAATCCCATTTTGTTGTTGAATTAACATATAATTATGGGGTGACCTCGTATGACATTGGGGATGGCCTTGGACATTTTGCAATTGCAACTCAGGATATTTACAAACTGGTTGAGCTCATCCGGTCCAAGGGAGGAAACATCACCAGGGAGCCTGGACCAATTCAGGGTGGGACTACTGTTATTGCCTTTGCAAAGGATCCAGACGGTTACACTTTTGGATTTATCCAGAGACCTACAGTCCATGACCCATTTTGTCAAGTAATGCTTCGTGTTGGTGATTTAGAACGCTCAATTAAGTTTTATGAAAAGGCTTTGGGCATGAAGGTATTGAGGAAGGTAGACAAGCCTGAGTCCAAGTACACTGTAGCTATGATTGGGTATGGAGAAGAGCATGAGACAACTGTGTTGGAGTTGACGTATAACTATGGTGTCACTGAATACTCCAAGGGAAATGCCTATGCACAGATTGCTATTGGTACTGATGATGTATACAAGAGTGCTGAGGTAGTTAGCCAAGTTATACAAGAGTTAGGAGGGAAGATTACTCGACAACCAGGGCCAATTCCTGGCCTTAATACAAAAACCACTTCGTTTTTAGATCCAGATGGATGGAAAACTGTCTTGGTTGACAATGTTGATTTCTTGGAGGAACTGAAGTGA 912 0.4342 MRAYPAVITDTYRTRTIQNQTPNMAELLEWPKKDNRRMLHVVYRVGDLDRTIKFYTECFGMKLLRHRDIPEEKYANAFLGFGPEESHFVVELTYNYGVTSYDIGDGLGHFAIATQDIYKLVELIRSKGGNITREPGPIQGGTTVIAFAKDPDGYTFGFIQRPTVHDPFCQVMLRVGDLERSIKFYEKALGMKVLRKVDKPESKYTVAMIGYGEEHETTVLELTYNYGVTEYSKGNAYAQIAIGTDDVYKSAEVVSQVIQELGGKITRQPGPIPGLNTKTTSFLDPDGWKTVLVDNVDFLEELK* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00130 303 Gene3D - 11 161 IPR029068 -
Lapu3g00130 303 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 36 167 IPR029068 -
Lapu3g00130 303 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 170 289 IPR004360 -
Lapu3g00130 303 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 38 157 IPR004360 -
Lapu3g00130 303 PANTHER LACTOYLGLUTATHIONE LYASE 20 302 - -
Lapu3g00130 303 Gene3D - 164 303 IPR029068 -
Lapu3g00130 303 CDD GlxI_Ni 38 159 - -
Lapu3g00130 303 ProSitePatterns Glyoxalase I signature 1. 40 61 IPR018146 GO:0004462|GO:0046872
Lapu3g00130 303 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 37 161 IPR037523 -
Lapu3g00130 303 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 167 295 IPR037523 -
Lapu3g00130 303 NCBIfam lactoylglutathione lyase 37 161 IPR004361 GO:0004462|GO:0046872
Lapu3g00130 303 ProSitePatterns Glyoxalase I signature 1. 170 191 IPR018146 GO:0004462|GO:0046872
Lapu3g00130 303 FunFam Lactoylglutathione lyase 163 303 - -
Lapu3g00130 303 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 168 295 IPR029068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00130 Lapu-Chr3 1533792 1537501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00130 170 294 Calmodulin-binding Proteins AT1G08110 29.139 6.01e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00130 K01759 - gmx:100793089 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00130 3 1533792 1537501 Lapu3g00130 3 1533792 1537501 ECH
Lapu6g01598 6 15871745 15875860 Lapu3g00130 3 1533792 1537501 ECH
Lapu3g00130 3 1533792 1537501 Lapu6g01598 6 15871745 15875860 PCT