Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00117 ATGGCCACGTCAACTACACCCCTCTTGCTTTCATGCTTCATGCTACACCTTGCTTCAACCTTTGTTATTGCTCATTCAGCACAGAACAACTACTACAACAACACTCCCCAACCTCTCTCTGAGTGTATCCCTAACAAATCATTGCTCAATGTGATAGACTCTTGCTGGAGGGCCAAACCAAATTGGAACTCAAATCGCCAAGCCTTGGCTGATTGTGCAATTGGCTTTGGCAAAGATGCCTCTGGTGGTAAATATGGTGCAATATACAAAGTCTCAGATTCCTCTGATGACCCTGTAAACCCAAAACCAGGTACACTCCGTTATGGTGCAATCCAAAATGAGCCACTCTGGATCATTTTTGACAAAGACATGATCATTAAACTAAAAAATGAGCTTATTATGAGCAGCTACAAGACCATTGATGGAAGAGGGGCAAAAGTGGAGATTGCTGATGGACCTTGTATTACAATACAAAGTGTTAGTCATGTTATTATACATGGCATTAGCATCCATGATTGCAAACCAGCCAAGTCTGGCCTTGTGAGGACCACTCCAGACCATGTTGGTCATCGTCTAGGCTCAGATGGAGATGGAATTAGCATAATTTATTCCACCAATATTTGGATTGATCATTGTTTTTTGGCTCGTTCCACCGATGGCCTAATCGATGTTATTCGTGCTTCAACTGCCATTACCATCTCCAACAACTACTTTACTCAGCATGACAAAGTTATGTTGCTAGGACATAGTGACCAATTCACAAAGGATAAAATAATGAAAGTAACAATAGCCTTCAACCAGTTTGCTAGTGGCCTAACTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCCCATGTGGTCAACAACAAATATGATGAGTGGAAAATGTATGCTATAGGCGGTAGTGCCAACCCAACCATTTTAAGTGAAGGGAATTTTTATGCAGCACCAGATGACCCAAATGCAAAACAGGTTACAAAGAGGGAAGTGAAGGAAAACTGGAAAAGTTGGAAATGGAGGTCTTCCAAGGACTTGTTTTTAAATGATGCTTATTTTGTATCATCTGGATTTGGAAGCTGTGCTCCAAATTACTCACCAACTCAATCTTTTCCTGTTGCTCCAGCGTACACTGTGCCTGCAATAACTCTAAATGCAGGCCCCACAAATTGTAGTGTTGGGAGAGCATGTTAG 1191 0.4173 MATSTTPLLLSCFMLHLASTFVIAHSAQNNYYNNTPQPLSECIPNKSLLNVIDSCWRAKPNWNSNRQALADCAIGFGKDASGGKYGAIYKVSDSSDDPVNPKPGTLRYGAIQNEPLWIIFDKDMIIKLKNELIMSSYKTIDGRGAKVEIADGPCITIQSVSHVIIHGISIHDCKPAKSGLVRTTPDHVGHRLGSDGDGISIIYSTNIWIDHCFLARSTDGLIDVIRASTAITISNNYFTQHDKVMLLGHSDQFTKDKIMKVTIAFNQFASGLTERMPRVRFGYAHVVNNKYDEWKMYAIGGSANPTILSEGNFYAAPDDPNAKQVTKREVKENWKSWKWRSSKDLFLNDAYFVSSGFGSCAPNYSPTQSFPVAPAYTVPAITLNAGPTNCSVGRAC* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00117 396 Gene3D - 49 389 IPR012334 -
Lapu3g00117 396 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Lapu3g00117 396 PRINTS Pollen allergen Amb family signature 95 120 IPR018082 -
Lapu3g00117 396 PRINTS Pollen allergen Amb family signature 195 216 IPR018082 -
Lapu3g00117 396 PRINTS Pollen allergen Amb family signature 337 361 IPR018082 -
Lapu3g00117 396 PRINTS Pollen allergen Amb family signature 275 294 IPR018082 -
Lapu3g00117 396 PRINTS Pollen allergen Amb family signature 72 89 IPR018082 -
Lapu3g00117 396 PRINTS Pollen allergen Amb family signature 367 390 IPR018082 -
Lapu3g00117 396 PRINTS Pollen allergen Amb family signature 131 147 IPR018082 -
Lapu3g00117 396 SMART amb_all 123 320 IPR002022 -
Lapu3g00117 396 Pfam Pectate lyase 129 314 IPR002022 -
Lapu3g00117 396 SUPERFAMILY Pectin lyase-like 70 395 IPR011050 -
Lapu3g00117 396 PANTHER PECTATE LYASE 18-RELATED 36 394 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00117 Lapu-Chr3 1442063 1444172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00117 46 396 Polysaccharide Lyase AT1G11920 68.466 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00117 K01728 - gmx:100807483 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00117 3 1442063 1444172 Lapu3g00117 3 1442063 1444172 ECH
Lapu3g00117 3 1442063 1444172 Lapu6g01613 6 16014534 16021193 PCT