Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00113 ATGGAGGTTTTTGTCCCTAGAGAAGAACACTCAAAATCTCCTCAAATAAAGGATAAGCTGGAGTTGTCCAGATGTTCAGAAGTTTATGGAACTTTGAAGAGAAAAGCTGAAGAAATTCCCGAACATGCTGATAAGAAATTCAAACAAGAAGGGAAAAAAGCTATGATGTGTTCAAAGAAGAATTGTGCAGTAAGAGTGACTAAAAAGGAGAGAGAGGTTGGAAAAATCTATAAGTTTGAGAAGTTAGAAGGGAAAGAAGATTCTTGTTCATTGCGGACAACAAAACTACCATGCAAGAGAAGAGATGTGAAACAAAAGCTTACTGTCTCAAACAAGAAAAGGAAATATAAAGATGATCTCTTGGATGATGATTTAGAAGAAGAAGAAATGCTTATTCTCTTAAGGGCAAAGACCAGGAGCAGATCTAGAAGAATGAATCACGTGAAGGATGTTGAACAAAAGCCTCGAAATTGTCATCAATGCAAGAAAAAGGGAAGAATACTTTTTGTGCCTTGTACCAAATGTTCGAACATGTACTGTATGCAATGTGTTGATAAATGGTACCCCCATATGACAATAGAAGAAATTACTGTAAGTTGTCCGTTTTGCCGGAAAAACTGCAATTGCAATGTTTGCTTGTGCTCAAGAGGAATGATTAAGACATCTAACAGGGACATAACTGATTATGAAAAAGCTCAGTATCTGCATTATATGATTAACTTACTCCTACCATTTTTGAAACAAATTTGTCATGAACAAAGTCAAGAGGAGCAGATTGAAGCTAAAATACTAGGAAAACCTTCTTTTAAGAAGGAAATACCTCAAAGTCTTTGTGGCAACGATGAACGTGTCTATTGTGATCATTGTGCTACTTCAATTATTGACCTTCATCGAAGCTGTCCCTGTTGTTCCTATGAACTCTGCCTTAGTTGTTGTCAAGAAATACGTGATGGATGCATTACATCCCGGGTCGAGCAGAAGTTCTCATATGTGAATAGGGGCTATGATTATATGCATGGTGGAGATCCTCTACCTGTGTCTAATGATTTAGGGACATCAGAATGTCATACCAAGCTATCTACTGTGTGGAATGCTAAGAGTGATGGAAGCATTCGATGTGCACCAAAGGAGTTGGGGGGTTGTGGTAGTGCTGTATTGGAGCTGAAATGTGTTCTCCCAAGTGGTTGGATATCTGGATTGGAAATCAAAGCTCGCAGTGTGCTGAAAATCTGGGAAAATGAAAACACAACTCTTCTGCAAAAAAATGCACTATCAAGTAATATGAACTATTCAGAGTCAAGTAACATTCAAAAGGGAGGATTGTTACTTTTCCAAGAGCATTGGGCTAATGGTGAACCAATTATATTTCGTGATGCCCTTAAACTGGGGACTGGTCTAAGCTGGAAGCCGATGGTAATGTGGCGAGCATTATGTGAAAATATGGTTTCAGAGGTCAGTTCAAAAATGTCAGAAGTGAAAGCCATTGATTGTCTGGCTAATTGTGAGGTAGAAATCGATACTCACACATTTTTTAAAGGTTATATAGAGGGAAGAACGTACAGAAATCTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCCTCTGATAAATTTGAAGATCTTTTGCCCCGCCATTGTGATGAGTTTATTCGCTCCTTGCCATTCCAAGAGTACAGCGATCCTCGGAGTGGAGTTCTCAATCTTGCTGCGAAGTTGCCAGCCCATGTCCTAAAACCTGACATGGGTCCGAAAACATATATTGCCTATGGGATTAAAGAAGAGCTTGGTAGAGGAGACTCTGTAACAAAGCTGCACTGCGATATGTCGGATGCGGTGAATATTTTGACCCATACAGCAGAGGTGATGTTAACTGATGAGCAACACTTAATTATTTCAAAGTTCAAAGAAGCACACAAGGTACAAGATAAGAGAGAGCAGTGTGCTCAAGAAAGGGTTACCGACAGCCTGAATGGCCGACCTTTCAAAGACAACAAAATACGGATAGAAAATAAGGTAGTTTTAGAATCCAAAGACAGAGAGAAGCGCCCTATTGAAATTAATGGAACGATCTTTCCAAGTGATGTACATGAGGGGGTCACTTCTGCTACAGATAATGAATCAATGGAAACGGGCAGTGCTCTATGGGATATCTTTCGGAGAGAAGATTCTGAGAAGTTAGAAACATATCTTAGGAAACACTCAAAAGAATTTAGACATACTTACTGTTCTCCAGTTGAACAGGTTGTACATCCCATTCATGACCAATGTTTTTATTTGACATCGGAGCACAAGAGGAAGCTGAAGGAGGAGTTCGGCGTAGAACCATGGACTTTTGAGCAAAAACTTGGGGAGGCGGTATTTATTCCTGCTGGATGCCCACATCAAGTCAGAAATCTCAAGTCATGTACAAAAGTTGCGGTAGACTTTGTGTCCCCAGAAAATATCCACGAGTGTCTGCGTTTAACTAATGAGTTCCGCCAGCTTCCCAAGAACCACAAGGCTAGAGAAGATAAGCTTGAGATAAAGAAGATGATAGTTTATGCCATTGATGAAGCTGTCAAAGACCTAAAAACTTTACTAAAGTTATCTTGA 2595 0.3985 MEVFVPREEHSKSPQIKDKLELSRCSEVYGTLKRKAEEIPEHADKKFKQEGKKAMMCSKKNCAVRVTKKEREVGKIYKFEKLEGKEDSCSLRTTKLPCKRRDVKQKLTVSNKKRKYKDDLLDDDLEEEEMLILLRAKTRSRSRRMNHVKDVEQKPRNCHQCKKKGRILFVPCTKCSNMYCMQCVDKWYPHMTIEEITVSCPFCRKNCNCNVCLCSRGMIKTSNRDITDYEKAQYLHYMINLLLPFLKQICHEQSQEEQIEAKILGKPSFKKEIPQSLCGNDERVYCDHCATSIIDLHRSCPCCSYELCLSCCQEIRDGCITSRVEQKFSYVNRGYDYMHGGDPLPVSNDLGTSECHTKLSTVWNAKSDGSIRCAPKELGGCGSAVLELKCVLPSGWISGLEIKARSVLKIWENENTTLLQKNALSSNMNYSESSNIQKGGLLLFQEHWANGEPIIFRDALKLGTGLSWKPMVMWRALCENMVSEVSSKMSEVKAIDCLANCEVEIDTHTFFKGYIEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRSLPFQEYSDPRSGVLNLAAKLPAHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVMLTDEQHLIISKFKEAHKVQDKREQCAQERVTDSLNGRPFKDNKIRIENKVVLESKDREKRPIEINGTIFPSDVHEGVTSATDNESMETGSALWDIFRREDSEKLETYLRKHSKEFRHTYCSPVEQVVHPIHDQCFYLTSEHKRKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENIHECLRLTNEFRQLPKNHKAREDKLEIKKMIVYAIDEAVKDLKTLLKLS* 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00113 864 Gene3D Cupin 424 836 - -
Lapu3g00113 864 Pfam JmjC domain, hydroxylase 706 810 IPR003347 -
Lapu3g00113 864 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 45 861 IPR045109 GO:0032454|GO:0033169
Lapu3g00113 864 ProSiteProfiles JmjC domain profile. 562 827 IPR003347 -
Lapu3g00113 864 CDD cupin_RmlC-like 751 811 - -
Lapu3g00113 864 ProSiteProfiles Zinc finger RING-type profile. 158 204 IPR001841 -
Lapu3g00113 864 SMART cupin_9 543 827 IPR003347 -
Lapu3g00113 864 SUPERFAMILY Clavaminate synthase-like 442 860 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00113 Lapu-Chr3 1416848 1422332 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lapu3g00113 JmjC 2.2e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00113 K15601 K21989 gmx:100797860 1322.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00113 3 1416848 1422332 Lapu3g00113 3 1416848 1422332 ECH