Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00109 ATGGAAGGTGGTTCTAACGAGGCTTCCAGTGTAATGGGTTTTGGAGAGAATACAACTAGTAGTGGGGTTTGTCCAATGATGATGATGCCTTTAGTGACTTCTCATCATGGTGGTCATCATCCATTAAATCCTAATCTTAATAATCCCAATCGCAATCTTAATGAAAACACAAACACTCTCTTCCCTCCCATGCCTTGTACTAATAATAATCACCATTCAAGCCGTCATACCATACACAACAATAACCACAACACCAACACCTCTGAGATAGGGTATTTCATGGAGATCCACAACCGCAACGCGAACAACAACAACGACGGAAGCTCCTCTTCTTCTGCTGCTGTGAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCCTACGTCAATTGTCAAAAGGTTGGGGCGCCACCTGAAGTGGTGGCAAGACTAGAAGAAGCGTGTGCATCTGTTGCAGTGACTATGGCAGGTGGAACTGCTAGAATCGGTGAGGATCCGGCGCTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTGATTAAGTACGAGCAAGAGCTCTCCAAACCCTTCAAGGAAGCCATGCTCTTTCTTCAAAGGATCGAGTGCCAGTTCAAAGCTCTTACTATTTCTTCTTCCGACACTGCTTGTAATGAAGGTGGTGGTAGGAATGGATCGTCTGAGGATATGGATGTACACAATAACATAATAGATCCACAGGCAGAGGACCAAGAACTGAAAGGTCAACTCTTGCGTAAGTACCGTGGATACCTAGGTAGTTTGAAGCAGGAATTCACCAAGAAGAGAAAAAAGGGCAAGTTGCCTAAAGAAGCAAGGCAACAATTACTTGATTGGTGGAGCAGACACTACAAATGGCCTTACCCATCTGAATCTCAGAAGCTGGCTCTTGCAGAGTCGACAGGGCTGGATCAGAAGCAAATTAATAACTGGTTCATTAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAATTTGTGGTGGTTGATCCAAGCCATCCACACTACTACATGGAAAATGTTCTGGGCAATCCCTTTCCTGATCTCTCCCACACAATGCTCTAA 1098 0.4554 MEGGSNEASSVMGFGENTTSSGVCPMMMMPLVTSHHGGHHPLNPNLNNPNRNLNENTNTLFPPMPCTNNNHHSSRHTIHNNNHNTNTSEIGYFMEIHNRNANNNNDGSSSSSAAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASVAVTMAGGTARIGEDPALDQFMEAYCEMLIKYEQELSKPFKEAMLFLQRIECQFKALTISSSDTACNEGGGRNGSSEDMDVHNNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMENVLGNPFPDLSHTML* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00109 365 ProSiteProfiles 'Homeobox' domain profile. 268 331 IPR001356 GO:0003677
Lapu3g00109 365 SUPERFAMILY Homeodomain-like 270 346 IPR009057 -
Lapu3g00109 365 FunFam Homeobox protein knotted-1-like 2 273 335 - -
Lapu3g00109 365 ProSitePatterns 'Homeobox' domain signature. 306 329 IPR017970 GO:0000981|GO:0006355
Lapu3g00109 365 SMART KNOX2_2 162 213 IPR005541 GO:0003677|GO:0005634
Lapu3g00109 365 SMART KNOX1_2 113 157 IPR005540 GO:0003677|GO:0005634
Lapu3g00109 365 Pfam Homeobox KN domain 288 327 IPR008422 GO:0003677|GO:0006355
Lapu3g00109 365 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 71 337 - -
Lapu3g00109 365 CDD homeodomain 280 332 IPR001356 GO:0003677
Lapu3g00109 365 SMART ELK_2 248 269 IPR005539 GO:0003677
Lapu3g00109 365 Pfam KNOX2 domain 166 212 IPR005541 GO:0003677|GO:0005634
Lapu3g00109 365 Pfam KNOX1 domain 114 153 IPR005540 GO:0003677|GO:0005634
Lapu3g00109 365 Gene3D - 273 335 - -
Lapu3g00109 365 ProSiteProfiles ELK domain profile. 248 268 IPR005539 GO:0003677
Lapu3g00109 365 SMART HOX_1 270 335 IPR001356 GO:0003677
Lapu3g00109 365 Pfam ELK domain 248 268 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00109 Lapu-Chr3 1375918 1380695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00109 115 365 Homeobox Transcription Factor Family AT1G62360 78.626 4.61e-130 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lapu3g00109 KNOX2 1.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00109 - - gmx:100127401 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00109 3 1375918 1380695 Lapu6g01629 6 16132446 16139975 PCT