Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00105 ATGAGTCAACTCGGTCTCATTTTACAGGAATCGCTCCGCACAGAGAGAGAAGCAAGAACCATCCTGGGTCTGTTAACGGACCAAATGGACGCCGTCGGTGGAGCCCAACGGAGGAGACGCACGCTCAAAGAACGCCTCAGATTCGCCGGAATCGGCTGCTGTGGAGCCACCTGGGTTTTCCGGCCGACCCTAAGGGACGAAGGAGGAACAACAACACCACCACCGCCGCCGCAACAACAACAACAACAACAACGAAACCCGGGGCAAGATCCGAACCAGAACAGACCCGAATGCGTGGGACCGAGCGGGTCGGGTTCGGGCATGAATCTTGCTGCGGCGCTAGCGGCGGAGCGGCAGTTGCGGGAATCTGAAGAGGGAAGGGTGTCGTTGATGCGGCTGTTGGAGGAGACGGAGGGTGGTGGGGATGCGGCGGCGGGTAATGATTCGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGCGCGGCATTTATCCCGTGTGGGCACACTTTCTGTAGGGTGTGTTCGAGAGAAATGTGGTTGAACAGAGGTACTTGTCCCCTTTGTAACCGTTCCGTTCTGGACATTCTCCACATCTTCTGA 600 0.5767 MSQLGLILQESLRTEREARTILGLLTDQMDAVGGAQRRRRTLKERLRFAGIGCCGATWVFRPTLRDEGGTTTPPPPPQQQQQQQRNPGQDPNQNRPECVGPSGSGSGMNLAAALAAERQLRESEEGRVSLMRLLEETEGGGDAAAGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGTCPLCNRSVLDILHIF* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00105 199 MobiDBLite consensus disorder prediction 64 103 - -
Lapu3g00105 199 MobiDBLite consensus disorder prediction 82 100 - -
Lapu3g00105 199 SUPERFAMILY RING/U-box 146 195 - -
Lapu3g00105 199 SMART ring_2 151 188 IPR001841 -
Lapu3g00105 199 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Lapu3g00105 199 Pfam Zinc finger, C3HC4 type (RING finger) 148 193 - -
Lapu3g00105 199 CDD RING-HC 151 188 - -
Lapu3g00105 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 196 IPR013083 -
Lapu3g00105 199 PANTHER OS01G0917900 PROTEIN 5 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00105 Lapu-Chr3 1319189 1319788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00105 21 199 C3H Transcription Factor Family AT4G22250 51.485 2.07e-54 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00105 - - pvu:PHAVU_003G082200g 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00105 3 1319189 1319788 Lapu6g01637 6 16227328 16228591 PCT