Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00103 ATGAAGCTTGAGAACTCCAACTGCCAGCCGCTCATCGCCGCTCACGTTCCGCCGCCGCAGGACGCCGACGCCGAGGAGATATTCGTGCCGCCGCTCAACTTCGCCATGGTCGACAACGGCATTTTTCGGTCTGGTTTTCCCGATTCTGCTAACTTCGGATTCTTGAAATCACTCCGCCTCCGTTCCGTGATGTGTTTGTGTCCGGAACCGTATCCTGAAACGACGTCCGAATTCTTGAAGGAGAACGGAATAAGGCTTTATCAGTTCGGGATCGATGGCTGTAAGGAACCCTTTGTCAACATACCAAACAAAACAATTCGGGAAGCTTTGAAAGTGGCCCTCGATGTTAAAAACCATCCCCTTCTGATTCATTGTAAACGAGGAAAGCACCGCACTGGTTGTCTTGTGGGATGCATAAGAAGATTGCAGAGATGGTGTCTATCATCTGTTTTTGACGAGTATCAAAGGTTTGCAGGTGCCAAGGCCAGGGTGTCAGACCAGAGGAAGGGCAATAACATGGGGAAATCAGGGGGTAGAAGAAAGAAGGGTGGTTCGAACCCAAACCAAGGTGTGGTTGATAATTCGGGTTCAGGTGTGGGTGTCCCAACGGCTAACGGTGGGGCGGAGTTGCTGGATTCGTCGATATTTTTGAAGAAGGCGAATGAGATGAAAGAGGAAGGGAATAGGAGGTTCCAGAATAAGGACTATGCGGGTGCTCTTGAACAGTACGAGACTGCTCTTCGTTTAACCCCCAAAACGCACCCTGACAGAGCCGTTTTCCACAGCAATAGGGCGGCGTGTTTGATGCAGATGAAGCCCATAGATTATGAAACTGTGATTGCTGAATGCACCATGGCGCTTCAGGTCCAGCCCCGCTTTGTCCGGGCCCTTCTTCGCCGCGCCCGTGCCTTCGAGGCCGTTGGGAAGTATGAAATGGCTGTGCAGGATGTGCAGTTCTTGTTGGCTGCTGATCCTAGTAACCGTGATGCTTTGGAGATCGCCCAGAGATTGAGGACTGCGTTGGGGCCGCGCCAGGAAGCCCAGCAGGACCTCCAAAGTCGACCCTCTCCGGCTGCCCTTGGCGCTTCTGCCGTCCGTGGCGCCCCAATTGCTGGATTGGGGCCATGTTTGCCAGCCCGTCCTGTGGCGAAGAAGGGAGCCAATGCAGCAGTTGGATCTGTTGCGTTGCCTAATAATAACAAGCTAGACAACAAGGCACAGCCGGTTTTGCCTACTGAAAATGGTTCTCATAGCAAGTCCCACTTGCCAAAACTGGTGTTGAAGCCTTCAAATGGTTCTCCAAAGCCACCTAACCCTCGAAAGGATGACCACAAGGAACAGTCGTCCGCCATTCATGGGCAACGTTCTCAGGCTGCAATTCTCTGGAGACCGTTGAAGCTTGTTTATGATCATGACATTAGGCTCGCACAGATGCCAGTCAATTGCAACTTTAGAGTGCTGAGGGATGTAGTGAGCAAAAGATTTCCTTCGTCAAGTTCTGTTCTGATAAAGTATAAGGATTGTGATGGTGATCTGGTTACTATAACCTCTACTGATGAACTCAGACTGGCAGAGTCTAGTGTTGATAGCCATCTCCTCAAGGAACTTGGGGAAGTTAAAAGTGATACTGTTTCAATGCTGAGACTGCATATTGTTGAAGTTAGTCCGGAGCAGGAGCCACCTTTATCGGAAGAAGAGGAAGAAAAACCAGTTGAGAATGAAGGGGTCAAGGGAGATGAGAGTGGATCTCACTCTTCCCTTGGGGAATCCGTCTCTGAAGTTCCTGATAGTGAGGTTGATAAGATTGAGAAGGATGCTCCAAAGGAAAAGCCAGGAGCCACTGGAGATACTGACTGCAAGGAGGTGGAGATGGATGATTGGCTATTTGAGTTTGCTCAACTTTTCCGCTCACATGTTGGTATTGACCCAGATGCTCATATTGACTTGCATGAACTTGGGATGGAGCTTTGTTCTGAGGCACTCGAGGAAACAGTAACTAGTGAGGAGGCTCAGGATCTATTTGACAAGGCTGCTTCAAAGTTTCAGGAGGTTGCTGCTTTAGCTTTCTTCAACTGGGGTAATGTTCACATGTGTGCAGCTAGGAAGCGGATCCCTCTGGACGAGTCAGCTGGGAAAGAGGTAGTGGCTGAGCAGCTTCAAGTGGCTTATGAATGGGTCAAGGAAAAGTATTCTTTGGCAAGAGAGAAGTACGAGGAAGCACTCTCGATCAAATCAGACTTTTATGAGGGACTGTTGGCTCTGGGGCAGCAGCAATTTGAAATGGCTAAACTTCATTGGTCTTTTGCCCTTGCTAAGAAGATAGATCTATCTGGTTGGGATTCTAAGGAGACACTTCAACTTTTTGACAGCGCAGAGGAGAAGATGAAAGCAGCAACAGATATGTGGGAGAAACTAGAGGAGCAGAGAGCAAAAGAGCTAAAGGACCCAAATGCCACCAAGAAAGATGAATTATTGAGAAGAAGAAAGAAACAAGGAGGTGCCACTGAAGGTGAGTCCTCTACTGTTGGAGGTCAGGGTGATATATCTGCAGAAGAAGCTGCGGAGCAAGCAGCTGTCATGAGATCTCAAATTCACCTCTTCTGGGGTAATATGCTTTTTGAAAGATCCCAAGTTGAATGCAAATTGGGAATGAGTGGATGGAAGGAAAACCTGGATGCTGCAACTGAACGCTTTAAGCTTGCAGGAGCTTCTGAGGCAGATATTTCAATGGTTCTGAAGAATCATTCCTCAAATGGAGATGCCAAAGATGGAGATGATAAAAAGGTTGAGAACACACGGCACAATAAGACCATTAAACCAACCAGAGATCAATAA 2835 0.4843 MKLENSNCQPLIAAHVPPPQDADAEEIFVPPLNFAMVDNGIFRSGFPDSANFGFLKSLRLRSVMCLCPEPYPETTSEFLKENGIRLYQFGIDGCKEPFVNIPNKTIREALKVALDVKNHPLLIHCKRGKHRTGCLVGCIRRLQRWCLSSVFDEYQRFAGAKARVSDQRKGNNMGKSGGRRKKGGSNPNQGVVDNSGSGVGVPTANGGAELLDSSIFLKKANEMKEEGNRRFQNKDYAGALEQYETALRLTPKTHPDRAVFHSNRAACLMQMKPIDYETVIAECTMALQVQPRFVRALLRRARAFEAVGKYEMAVQDVQFLLAADPSNRDALEIAQRLRTALGPRQEAQQDLQSRPSPAALGASAVRGAPIAGLGPCLPARPVAKKGANAAVGSVALPNNNKLDNKAQPVLPTENGSHSKSHLPKLVLKPSNGSPKPPNPRKDDHKEQSSAIHGQRSQAAILWRPLKLVYDHDIRLAQMPVNCNFRVLRDVVSKRFPSSSSVLIKYKDCDGDLVTITSTDELRLAESSVDSHLLKELGEVKSDTVSMLRLHIVEVSPEQEPPLSEEEEEKPVENEGVKGDESGSHSSLGESVSEVPDSEVDKIEKDAPKEKPGATGDTDCKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDESAGKEVVAEQLQVAYEWVKEKYSLAREKYEEALSIKSDFYEGLLALGQQQFEMAKLHWSFALAKKIDLSGWDSKETLQLFDSAEEKMKAATDMWEKLEEQRAKELKDPNATKKDELLRRRKKQGGATEGESSTVGGQGDISAEEAAEQAAVMRSQIHLFWGNMLFERSQVECKLGMSGWKENLDAATERFKLAGASEADISMVLKNHSSNGDAKDGDDKKVENTRHNKTIKPTRDQ* 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00103 944 MobiDBLite consensus disorder prediction 912 944 - -
Lapu3g00103 944 MobiDBLite consensus disorder prediction 918 944 - -
Lapu3g00103 944 MobiDBLite consensus disorder prediction 594 619 - -
Lapu3g00103 944 SMART PB1_new 462 554 IPR000270 GO:0005515
Lapu3g00103 944 SUPERFAMILY CAD & PB1 domains 461 562 - -
Lapu3g00103 944 ProSiteProfiles TPR repeat profile. 220 253 IPR019734 GO:0005515
Lapu3g00103 944 Gene3D Protein tyrosine phosphatase superfamily 27 173 IPR029021 -
Lapu3g00103 944 FunFam probable tyrosine-protein phosphatase At1g05000 27 175 - -
Lapu3g00103 944 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 28 168 IPR029021 -
Lapu3g00103 944 Coils Coil 788 808 - -
Lapu3g00103 944 MobiDBLite consensus disorder prediction 396 419 - -
Lapu3g00103 944 SUPERFAMILY TPR-like 217 351 IPR011990 GO:0005515
Lapu3g00103 944 MobiDBLite consensus disorder prediction 808 834 - -
Lapu3g00103 944 PANTHER PROTEIN CLMP1 173 932 IPR044517 -
Lapu3g00103 944 MobiDBLite consensus disorder prediction 555 619 - -
Lapu3g00103 944 CDD PFA-DSP_Siw14 28 168 - -
Lapu3g00103 944 PRINTS Plant and fungal dual specificity phosphatase signature 65 78 IPR020428 GO:0016791
Lapu3g00103 944 PRINTS Plant and fungal dual specificity phosphatase signature 28 45 IPR020428 GO:0016791
Lapu3g00103 944 PRINTS Plant and fungal dual specificity phosphatase signature 84 98 IPR020428 GO:0016791
Lapu3g00103 944 PRINTS Plant and fungal dual specificity phosphatase signature 101 115 IPR020428 GO:0016791
Lapu3g00103 944 MobiDBLite consensus disorder prediction 808 848 - -
Lapu3g00103 944 MobiDBLite consensus disorder prediction 396 455 - -
Lapu3g00103 944 Pfam Tyrosine phosphatase family 29 167 IPR004861 -
Lapu3g00103 944 ProSitePatterns Tyrosine specific protein phosphatases active site. 123 133 IPR016130 GO:0016311|GO:0016791
Lapu3g00103 944 CDD PB1 465 536 - -
Lapu3g00103 944 MobiDBLite consensus disorder prediction 162 199 - -
Lapu3g00103 944 ProSiteProfiles PB1 domain profile. 462 554 IPR000270 GO:0005515
Lapu3g00103 944 Gene3D Tetratricopeptide repeat domain 216 341 IPR011990 GO:0005515
Lapu3g00103 944 SMART tpr_5 714 747 IPR019734 GO:0005515
Lapu3g00103 944 SMART tpr_5 258 293 IPR019734 GO:0005515
Lapu3g00103 944 SMART tpr_5 294 327 IPR019734 GO:0005515
Lapu3g00103 944 SMART tpr_5 220 253 IPR019734 GO:0005515
Lapu3g00103 944 Gene3D - 464 535 - -
Lapu3g00103 944 ProSiteProfiles Dual specificity protein phosphatase domain profile. 33 185 IPR020422 GO:0006470|GO:0008138
Lapu3g00103 944 ProSiteProfiles TPR repeat profile. 294 327 IPR019734 GO:0005515
Lapu3g00103 944 Pfam PB1 domain 462 553 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00103 Lapu-Chr3 1290298 1298239 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00103 26 168 Protein tyrosine phosphatase (PTP) family AT4G03960 74.126 4.10e-77 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00103 K26538 - gmx:100786963 1308.12