Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00090 ATGTCTATGATTGAAACCCCCGCCGTCCACCACCTTAGCGGGGGCGCCACCGATCACCACCGTCACTCCTCCAAACGCAAACTCGAGGAAGAAGATGACGGAGATTTCTCGGACTTAGTGTGTGTCAGGATGCGTAAAGAAGAGGCGGTAAATTCTTGGTCTGGCTCTTCCGGCGCCGCCGATAGCGGCTGTTCGGCTGCTTTGCAGAAGCAGCGATCGCACATCCAGTTCTTCGTGCGAATGATGTCGGCTGGAAACACGATTGTGATGCAGGCCTCCCCAGAAGACAGCGTGAAATCGATTCACGAACGTATCCAAAGTATGAAGGGAATCCCGGTGTTTGAACAAAGGTTAATTTATCGCGGAAAACAGCTTCAGTGGGAACAGACTCTAGCAGAGTGTTCCATTCAAAACGACGCCAATCTTCAACTCGTTGGTCGAATGCGCAGTACTGAACATCCTCAAGCTTGGCAAATCATCAACGACATGGTTTCCCTCGTGTATCGACTCTGTTGTGGTGAGACTGTTCACGATTCCTTGAAGACTATTAAGGGGTTAATCACCAGTTACTTGAACTTGACTCCGAGGATTGACAACGAATCTGCTTCTGGGTATTTTCAGATTTTCATGTCTTCTTCCGCTCCTGACGTACTTGTTATGCTATATGTGTCCCCCTATGCAGGTAACAAAGACTGTGCTGATTCTTCTGTTAGGCACTTCTTGAGTTCTTGCCGGAATACCTTGTCTAAGGCATTGCACGGGCAGTGTGCATGTGTAGTGTTGGAGTTTTGTAAATTGCTTAGGAGAGTGGGATGTAACGATCCGTTGTATCTCTATTGTCGGAGTACTTTTGGGTCTTTGTTGGAAACTGCTGGCGTTGCTGGCGTATCTTATGCTGGTTCTGATAATATTAAGGGTTTAGTTTTGATTAAAGACATTTTCCCCTTTGTTTTTGAACTTGCGAATAGCTTGTTAATGGACTTGGACTCGAGTATGGAATCCCATACGGCTGTGGGGCCTTTGTCGAATGATGTTGGGGATTTTAGTGCCTTCTTAGTGCCTTTGAGAGCTGGAATCAAGGAGCAACAAGCTGTCAACGGTTCTATTGTTCAAGACAAAAGCAGTAAGGATCTCTTACATGCAAAAGAGATTGAATATCTTCATTGTTTATACATTCAGTTATTGAACAAAATCGACCAGTGCCTTCAAAAAATGAACCAGAGCTTGGCTGGCAAAGAATTGATGGAAGGGGATAATTTATATCCTGCTTGGTCTCATTATCTTTCCATCTTGAAGGAGTTGTATCAAATTTCTAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGAGTGTTTTGAGGCGACATAGAAGTGTGCTGTGTCTGTTGATTGTTCGATATGCAAAGAGAACTGATGAGCATCAGTGGATTCTGGAGCATAGGTGTGTGACCAATTTTGAGTCTAGAAGGCATTTGGCCATGATGATGTTCCCAGAGGTCAAAGAAGACTATGAGGAGTTGCACGAGATGCTCATTGACAGGTCTCAGTTGTTGGCTGAGTCTTTTGAATACATAGCACGTGCTGAGCCTGAATCTCTACATGCTGGCTTATTTATGGAATTCAAAAATGAGGAAGCTACTGGCCCAGGTGTACTAAGGGAGTGGTTTCTTTTGGTATGCCAAGCAATATTCAATCCACAAAATGCTCTTTTTGTGGCGTGCCCAAATGATCGAAGGAGATTTTTCCCTAATCCTGCATCTAAAGTACATCCTCTGCACCTTGAGTACTTCAGCTTCGCTGGTCGAGTTATTGCATTAGCTTTGATGCATAAGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCTTGCAATTGGCGGGAAACTACATTGCTTTAGAGGATATCAAGAATGCAGATCCTTGTCTGCATACTAGCTGCAAGCAAATATTGGATATGGATGCTGATTTCATTGATTCAGATGCATTAGGACTGACATTTGTTAGAGAGGTGGAGGAGTTAGGACAAAGGAAAGTGGTTGAGCTCTGCCCCGGGGGAAAAAACGTTGTAGTTAATAGTAAGAACAGGGATAAGTATGTTGAACTTCTTATACAGGATCGCTTTGTAACATCCATATCTGAGCAGGTATCACATTTTGCCAAAGGTTTTGCTGATATTCTTTCAAACTCCAAGCTCCAGCAGTACTTCTTCCAAAGTTTAGACCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAGACACCATTTCTGTTGAGGATTGGAAAGCACACACTGAGTATAATGGTTATAGAGAGACAGATATTCAAATATCTTGGTTTTGGGAGATTGTTGGGAGAATGACAGCTGATCAAAGGAAGGTTCTTCTATTCTTTTGGACATCTGTAAAATATTTACCAGTTGAAGGTTTCCGCGGTTTGGCTTCACGACTCTACATATACAGATCCCTTGAACCTGGTGATCGCCTGCCTTCATCTCATACATGCTTTTTCCGGCTGTGTTTCCCGGCTTATTCATCTATGGCTGTCATGAAAGAACGTCTTGAACTCATCACTCAAGAACACATTGGCTGCAGTTTTGGTACTTGGTGA 2607 0.4357 MSMIETPAVHHLSGGATDHHRHSSKRKLEEEDDGDFSDLVCVRMRKEEAVNSWSGSSGAADSGCSAALQKQRSHIQFFVRMMSAGNTIVMQASPEDSVKSIHERIQSMKGIPVFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQIINDMVSLVYRLCCGETVHDSLKTIKGLITSYLNLTPRIDNESASGYFQIFMSSSAPDVLVMLYVSPYAGNKDCADSSVRHFLSSCRNTLSKALHGQCACVVLEFCKLLRRVGCNDPLYLYCRSTFGSLLETAGVAGVSYAGSDNIKGLVLIKDIFPFVFELANSLLMDLDSSMESHTAVGPLSNDVGDFSAFLVPLRAGIKEQQAVNGSIVQDKSSKDLLHAKEIEYLHCLYIQLLNKIDQCLQKMNQSLAGKELMEGDNLYPAWSHYLSILKELYQISKLYDGAEEKLWSVLRRHRSVLCLLIVRYAKRTDEHQWILEHRCVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLAESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPNDRRRFFPNPASKVHPLHLEYFSFAGRVIALALMHKVQVGIVFDRVFFLQLAGNYIALEDIKNADPCLHTSCKQILDMDADFIDSDALGLTFVREVEELGQRKVVELCPGGKNVVVNSKNRDKYVELLIQDRFVTSISEQVSHFAKGFADILSNSKLQQYFFQSLDLEDLDWMLHGSEDTISVEDWKAHTEYNGYRETDIQISWFWEIVGRMTADQRKVLLFFWTSVKYLPVEGFRGLASRLYIYRSLEPGDRLPSSHTCFFRLCFPAYSSMAVMKERLELITQEHIGCSFGTW* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00090 868 MobiDBLite consensus disorder prediction 14 31 - -
Lapu3g00090 868 FunFam E3 ubiquitin-protein ligase UPL5 752 867 - -
Lapu3g00090 868 Gene3D - 68 163 - -
Lapu3g00090 868 Pfam Ubiquitin family 78 149 IPR000626 GO:0005515
Lapu3g00090 868 SMART hect_3 526 866 IPR000569 GO:0004842
Lapu3g00090 868 SUPERFAMILY Hect, E3 ligase catalytic domain 503 854 IPR035983 GO:0004842
Lapu3g00090 868 CDD HECTc 507 866 IPR000569 GO:0004842
Lapu3g00090 868 Pfam HECT-domain (ubiquitin-transferase) 557 860 IPR000569 GO:0004842
Lapu3g00090 868 PRINTS Ubiquitin signature 86 106 IPR019956 -
Lapu3g00090 868 PRINTS Ubiquitin signature 107 127 IPR019956 -
Lapu3g00090 868 PRINTS Ubiquitin signature 128 149 IPR019956 -
Lapu3g00090 868 ProSiteProfiles HECT domain profile. 528 868 IPR000569 GO:0004842
Lapu3g00090 868 Gene3D Hect, E3 ligase catalytic domain 628 710 - -
Lapu3g00090 868 ProSiteProfiles Ubiquitin domain profile. 75 151 IPR000626 GO:0005515
Lapu3g00090 868 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 68 163 - -
Lapu3g00090 868 MobiDBLite consensus disorder prediction 1 31 - -
Lapu3g00090 868 SUPERFAMILY Ubiquitin-like 75 162 IPR029071 -
Lapu3g00090 868 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 75 866 - -
Lapu3g00090 868 Gene3D Hect, E3 ligase catalytic domains 508 733 - -
Lapu3g00090 868 Gene3D Hect, E3 ligase catalytic domain 751 867 - -
Lapu3g00090 868 SMART ubq_7 75 147 IPR000626 GO:0005515
Lapu3g00090 868 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 628 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00090 Lapu-Chr3 1190433 1197772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00090 75 149 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.000 1.48e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00090 - - gmx:100796470 1552.73