Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00082 ATGCAAACGTCTCAGAAACACCCAAGTTCGGCTGGTGTAGACTTCTATCACCACCAGCCTGTGCAAGGCATTTACCAAGTGTTGCAAAGCAATCTATGCCATGATGCTCATGATAGCAGCAGCCAGGGAACTAGCGTTTCTTTTGAAACCTGCAAGGAGCAATACTTTACTCTGGAATCATGCCCTGCACCCACTACTGGTTTCATGGATTGTGATGATTCTCCTTCCTATGCCAGTGTATCATCTAAAAGGAGTCCATTTTCTCCACAAGGTTCCCAGTCTTGCTATTCAGATCACCACCAGTCCTCTGACAACACCTATGGATCACCAATAAGCGGTTTGTCTAGTGTTGATGAGGGGCATGAACTGAAGCACAAACTTAGAGAACTGGAGATTTCATTGTTGGGGCCTGATGAATCCGACATTATAGACAGTTCTGGGTGCTGTGTCAAGGGTAGCAGACTCTACGGAGCATCACAGTTGGCTAAACATAACTGGGATCAGATTGCTGAAAATATTTCACGGTTTGACCTGAAAGGAGTCCTCAGGGTATGTGCACAGGCCGTGTCTGATGATGATATTCCAACAGCAAGAGGGTGGATGGATAATGTATTGGGGAAAATGGTATCAGTCTCTGGAGATCCGATTCAGAGGTTGGGTGCTTACATGTTGGAGGGGCTTAGAGCAAGGTTGGAATCATCAGGGGATCTCATCTACAAATCCTTGAAGTGTGAACAACCAACAAGCAAAGAACTAATGAGTTACATGCACATCCTGTACCAGATTTGCCCATACTGGAAGTTTGCATACGTATCTGCAAATGCTGTCATTGTAGAAGCTATGGCTAATGAGTCCAGGATTCATATAATGGATTTCCAAATAGCGCAGGGCACACAGTGGTATTTACTTATCCAGGCTCTTGCACATAGGCCTGGGGGACCCCCTTCCCTTCGCGTAACCGGTGTTGATGATTCGCAGTCGTATCATGCTCGAGGTGGTGGACTTCAGATTGTAGGAGAAAGGTTGTCAGATTTTGCCAGGTCTTGTGGAGTTCCGTTTGAATTTCACAGTGCTGCAATGTCTGGCTGTGAGGTTGTGCGAGGAAATGTTGAAATTCGACCCGGGGAAGCTCTGGCGGTGAATTTTCCCTTTGTTTTGCACCACATGGCAGATGAGAGCGTGAGCACTGAGAATCACAGAGATAGATTGTTGAGGTTGGTTAAGAGCTTGTCTCCCAAGGTTGTCACCCTTGTGGAGCAAGAATCCAACACCAACACATCTCCTTTCTTTAATAGGTTTCTTGAGACCCTGGATTATTACACTGCCATGTTTGAATCCATAGATGTGGCTTGCCCCAGAGATGATAAGAGGCGGATTAGCGCAGAGCAGCACTGCGTGGCACGAGACATTGTCAACATGATAGCTTGTGAGGGGGTTGAGAGGGTTGAGAGGCATGAACTTTTTGGAAAGTGGAGGTCAAGACTTTCCATGGCTGGATTTAAACAGTGCCAATTGAGTTCTTCTGTGATGGTTGCTACTCAAAATCTCCTAAACGACTTCAGTCAAAATTATAGGCTTGAATATAGAGATGATGCCCTTTATCTTGGTTGGATGAACAGACATATGGCCACCTCTTCTGCTTGGAGAATGGAGAGGGAGGAAGAGAAGGAACGGCGTCGATTGCGTGACAGACAGAGGAGGCAATCAATGACTAAAGAGCAGAGGGAACGACACCTTGCACGACGGCGCAGAAACTACCAGCTCCGGAGAGAGAGAGCTGCAAATGCTCCATTACTGCCTCTTCCTCAATCAACCACTTCTCAACCCTTGCCCACCACTACTCCATCAAACCATACACTCCTTCTGCCAACGTTACAATTTCTTCAAGATGCAATGATGAACAATGGAGAAACAGGATCGTCGATCGAGTTGGAAGGTTTGCCGAGAAGGTTGCGTCTAAGTATTATTAAACGGCTTGCACGAAACCTAGGAAATCCAAAGAGTGTGGCACTTGACAATCTCCATGTCGCACCAGAGTTGATGTCAGGTAACAGTGGCACAACAAAAACCGTGCGTTTGAATAGCGTGAAGCGCCTTGCTCGATCATTAAGTTATGCTGCGGAAAAGACAACCATTGAGAAATAA 2145 0.4634 MQTSQKHPSSAGVDFYHHQPVQGIYQVLQSNLCHDAHDSSSQGTSVSFETCKEQYFTLESCPAPTTGFMDCDDSPSYASVSSKRSPFSPQGSQSCYSDHHQSSDNTYGSPISGLSSVDEGHELKHKLRELEISLLGPDESDIIDSSGCCVKGSRLYGASQLAKHNWDQIAENISRFDLKGVLRVCAQAVSDDDIPTARGWMDNVLGKMVSVSGDPIQRLGAYMLEGLRARLESSGDLIYKSLKCEQPTSKELMSYMHILYQICPYWKFAYVSANAVIVEAMANESRIHIMDFQIAQGTQWYLLIQALAHRPGGPPSLRVTGVDDSQSYHARGGGLQIVGERLSDFARSCGVPFEFHSAAMSGCEVVRGNVEIRPGEALAVNFPFVLHHMADESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFNRFLETLDYYTAMFESIDVACPRDDKRRISAEQHCVARDIVNMIACEGVERVERHELFGKWRSRLSMAGFKQCQLSSSVMVATQNLLNDFSQNYRLEYRDDALYLGWMNRHMATSSAWRMEREEEKERRRLRDRQRRQSMTKEQRERHLARRRRNYQLRRERAANAPLLPLPQSTTSQPLPTTTPSNHTLLLPTLQFLQDAMMNNGETGSSIELEGLPRRLRLSIIKRLARNLGNPKSVALDNLHVAPELMSGNSGTTKTVRLNSVKRLARSLSYAAEKTTIEK* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00082 714 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 126 539 IPR005202 -
Lapu3g00082 714 MobiDBLite consensus disorder prediction 546 613 - -
Lapu3g00082 714 ProSiteProfiles GRAS family profile. 169 549 IPR005202 -
Lapu3g00082 714 MobiDBLite consensus disorder prediction 546 576 - -
Lapu3g00082 714 MobiDBLite consensus disorder prediction 79 115 - -
Lapu3g00082 714 Pfam GRAS domain family 181 549 IPR005202 -
Lapu3g00082 714 MobiDBLite consensus disorder prediction 79 113 - -
Lapu3g00082 714 MobiDBLite consensus disorder prediction 599 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00082 Lapu-Chr3 1116606 1126714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00082 1 549 GRAS Transcription Factor Family AT4G17230 59.891 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lapu3g00082 GRAS 8.6e-124 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00082 - - gmx:100776109 1008.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00082 3 1116606 1126714 Lapu6g01670 6 16550118 16553761 PCT