Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00073 ATGGGTGGTGATGAGGGTCGACAATCATTGCTTTCAGAACATTCCAATGAGAAAAATGACCTCCAGAGGAGAAGGCCTAGAAGTGGTAATGCTTCGGAGAAGGAGATCAACCTCCGAGGACAAGATGTAGAACAAAACCCTTTACATCCTGAATGTATAGATGCAAAACCACAAGCAGAATTCCATTTCAAGCCAGTCATCTTCTGGTTAGCTGCATACCTAGGTGGAGGAACCCTTTGCTTCCTTCTCACAAATCATCAGATAAAGGGCATAAAAACCAATGGGTTTCTGGATGCCATTTACTTCTGTGTTGTAACAATGACGACAGTTGGATATGGAGATCTCGTGCCAGATAGCCAACTGTCAAAACTTCTTGCTTGCATTTATGTCTTCACTGGCATGGCTCTTGTAGGGCTAATTCTTAGCAAGGCAACAGATTATATTGTTGAAAAGCAGGAAATCATCCTTGTTAAAACCTTATTCAAGGGTGAAAATTTTGGTTCAGAAGAGCTTTCCCAAGAGGTCAAAACCAATAAAGCTAAATACAAATTCATCCTGACATCATCCATCTTTTTGGTGCTTATGATTGTGGGGATTACTTTTCTGTATTTTATTGAAAATCTAGATTTTGTTGATGCCCTTTATTGTGTTTGTTCCACAGTCACTACTTTAGGTTATGGGGATAAGAGCTTTTCCACTACTACTGGTCGTGCTTTTGCTGTGTTCTGGATATTAAGCAGCACAATTTGCTTAGCTCAGTCTTTTGCTTATCTTGCTGAACTTTATACTGAAAAAAGACAAAGGTCCCTGGCAAAAATGGTTCTCGCACGAAAGTTGTCACTCCTTGATCTTGAGGCAGCTGATCTTGATGGAGATCATGTGGTCAGTGCTACTGAGTTCGTTTTGTATAAGTTGAAGGAAATGGAAAAGATCAGCCAAGAGGATATTTTAGTTGTTATGGATATTTTTAGAAAACTAGATTTTGATCAATCAGGAACCCTGACAGAAGCTGATATCAGATAA 1023 0.3949 MGGDEGRQSLLSEHSNEKNDLQRRRPRSGNASEKEINLRGQDVEQNPLHPECIDAKPQAEFHFKPVIFWLAAYLGGGTLCFLLTNHQIKGIKTNGFLDAIYFCVVTMTTVGYGDLVPDSQLSKLLACIYVFTGMALVGLILSKATDYIVEKQEIILVKTLFKGENFGSEELSQEVKTNKAKYKFILTSSIFLVLMIVGITFLYFIENLDFVDALYCVCSTVTTLGYGDKSFSTTTGRAFAVFWILSSTICLAQSFAYLAELYTEKRQRSLAKMVLARKLSLLDLEAADLDGDHVVSATEFVLYKLKEMEKISQEDILVVMDIFRKLDFDQSGTLTEADIR* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00073 340 ProSiteProfiles EF-hand calcium-binding domain profile. 314 340 IPR002048 GO:0005509
Lapu3g00073 340 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 57 316 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lapu3g00073 340 PRINTS Two pore domain K+ channel signature 222 231 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lapu3g00073 340 PRINTS Two pore domain K+ channel signature 105 133 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lapu3g00073 340 ProSitePatterns EF-hand calcium-binding domain. 327 339 IPR018247 -
Lapu3g00073 340 SUPERFAMILY Voltage-gated potassium channels 178 277 - -
Lapu3g00073 340 SUPERFAMILY Voltage-gated potassium channels 64 150 - -
Lapu3g00073 340 SUPERFAMILY EF-hand 285 340 IPR011992 -
Lapu3g00073 340 ProSitePatterns EF-hand calcium-binding domain. 288 300 IPR018247 -
Lapu3g00073 340 Gene3D - 51 162 - -
Lapu3g00073 340 Gene3D - 253 340 - -
Lapu3g00073 340 Pfam Ion channel 191 262 IPR013099 -
Lapu3g00073 340 Pfam Ion channel 70 149 IPR013099 -
Lapu3g00073 340 MobiDBLite consensus disorder prediction 10 40 - -
Lapu3g00073 340 Gene3D - 189 252 - -
Lapu3g00073 340 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00073 Lapu-Chr3 1069566 1070812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00073 43 339 Ion Channels AT5G55630 55.892 5.75e-116 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00073 K05389 - gmx:100799492 558.91