Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00064 ATGGCTGAATCTGACAACGAATCAGGAGGTGGAAAGAACGAATTGTCAATTTGCAGAGAGCAAGACAGGCTCCTTCCCATAGCCAACGTGGGCAGGATCATGAAGAAGGTGTTGCCGGGCAACGCTAAGATTTCCAAAGAATCAAAAGAAACCATGCAAGAGTGTGTGTCAGAGTTCATCAGTTTTGTAACAGGAGAGGCTTCTGATAAGTGTCAGAAAGAGAAAAGAAAGACCATCAACGGGGATGATCTTCTGTGGGCCATGGCCTCACTTGGCTTCGAAGACTATGCAGAGCCCCTCAAAGCTTATCTACACAAGTACAGGGAGATGGAAGGGGAAAAAACTGCTATGATTGGGAAGCACCACGGTGCTACTGGCCTTTATGCAAATCCACTGTGA 399 0.4687 MAESDNESGGGKNELSICREQDRLLPIANVGRIMKKVLPGNAKISKESKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMASLGFEDYAEPLKAYLHKYREMEGEKTAMIGKHHGATGLYANPL* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00064 132 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lapu3g00064 132 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Lapu3g00064 132 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Lapu3g00064 132 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Lapu3g00064 132 FunFam Nuclear transcription factor Y subunit B-3 13 130 - -
Lapu3g00064 132 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Lapu3g00064 132 Gene3D Histone, subunit A 13 126 IPR009072 GO:0046982
Lapu3g00064 132 SUPERFAMILY Histone-fold 21 123 IPR009072 GO:0046982
Lapu3g00064 132 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 115 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00064 Lapu-Chr3 994470 995647 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00064 1 121 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.410 2.79e-65 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lapu3g00064 CBFD_NFYB_HMF 2.5e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00064 K08065 - gmx:100305641 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00064 3 994470 995647 Lapu6g01686 6 16695000 16696319 PCT