Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00062 ATGCATGCAGTTACTGACTTGCTAGTTACAAGTGGCATTCATGCATTCTGCAGCATCATATATCAGAATACAAGGATCTGTCTCCACACTACAAGTCTTCTTTTTCCTTCCTTCCCGCCGGCCAAGACAAGGCTCGGTGTGTTGGACGGACTAATATATGTACATGCATTATGCAGTTCCAATCCAACCATAGATATTTTTGAACAAGCCCTAAGTCCTATAACTTTTCAGACAGGAGACAACAACCACACCGCAGAGGAGAGCAACGAATGCACCGTGAGGGAGCAAGACCGTTTCATGCCCATCGCAAATGTGATTAGGATCATGCGGAAGATTCTTCCCCCACACGCCAAGATCTCAGATGATGCCAAAGAAACAATTCAAGAGTGTGTGTCTGAGTACATCAGCTTTATCACCGGAGAGGCAAACGAGCGTTGCCAGAGGGAACAACGCAAGACCATAACTGCAGAGGATGTGCTTTGGGCCATGAGCAAGCTTGGATTTGATGATTACATGGAACCACTGACCATGTACCTTCACAGGTATCGTGAGCTTGAGGGTGACCGAACCTCCATGAGGGGTGAACCACTGGGTAAGAGGACCATTGAATACGCCCCTATGGGTGTTGGTGTTGCTACTGCTTTTGTGCCGCCACCGTTTCACCCCAACGGATACTATGGTGCTGCCATGGGGACTTATGTAGCGCCACCAAATGCTGCGTCCTCTCATCACCATGGAATGCCTAATGCTGAACCGAATCCTCGCTCCATGTGA 774 0.4858 MHAVTDLLVTSGIHAFCSIIYQNTRICLHTTSLLFPSFPPAKTRLGVLDGLIYVHALCSSNPTIDIFEQALSPITFQTGDNNHTAEESNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYMEPLTMYLHRYRELEGDRTSMRGEPLGKRTIEYAPMGVGVATAFVPPPFHPNGYYGAAMGTYVAPPNAASSHHHGMPNAEPNPRSM* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00062 257 SUPERFAMILY Histone-fold 96 194 IPR009072 GO:0046982
Lapu3g00062 257 Gene3D Histone, subunit A 86 203 IPR009072 GO:0046982
Lapu3g00062 257 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 99 163 IPR003958 -
Lapu3g00062 257 ProSitePatterns NF-YB/HAP3 subunit signature. 130 146 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lapu3g00062 257 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 80 227 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lapu3g00062 257 PRINTS CCAAT-binding transcription factor subunit A signature 146 164 - -
Lapu3g00062 257 PRINTS CCAAT-binding transcription factor subunit A signature 127 145 - -
Lapu3g00062 257 PRINTS CCAAT-binding transcription factor subunit A signature 165 183 - -
Lapu3g00062 257 FunFam Nuclear transcription factor Y subunit B-6 88 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00062 Lapu-Chr3 979096 980596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00062 68 189 CCAAT-HAP3 Transcription Factor Family AT5G47670 81.301 7.00e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lapu3g00062 CBFD_NFYB_HMF 8.3e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00062 K08065 - gmx:100194424 301.212