Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00054 ATGAAGCGCTCAAATGACGACGTTGCCAATCCCTCAACGGTCAAGCCAACGTTCCTAACCAAAGCCCAACGCGAGCAATTGGCCCTCCAACGCCGCCAGGAAGAAGTCGCGGAGCAGAAGCGGCGCCAAGAGCAGCTCCTCTCCCGCAACCACTCCTCCGATCCCAAACCCTCCTCCGACCGGGACAGAGACAGAGAAAGGGACAGAGACCGTGACAACAGGGAGCGCGACCGCGACAGAGACAGGGACAGAGACCGCGAGAGGGCTCGTGACCGGGACCGGGACCGCGAACCCGAACGCCGCAACAGAGAGAGGGAGCGCGAAGAGGAAACCCGGTCCCGCGAGCGAGCTCGGTCGGACAAACTCGCGGAGCGCGAAAGAGCACGTGACCGGGACCGCGAAGCCGAACGCCGCAACAGAGAGAGGGAGCGTGAAGAGGAGACCCGGGCACGCGAGCGAGCTCGCTTGGAGAAACTCGCGGAGCGCGAGCGCGAGAAGGAGCTTGAGTCCATCAAGGAGCAGTACCTGGGCTCGAAAAAGCCCAAGAAGCGCGTCATCAAGCCCAGCGAGAAGTTCCGATTCTCCTTCGATTGGGAGAACACGGAGGACACCTCGCGCGACATGAACTCTCTCTACCAGAATCCCCACGAGGCTCAGCTCCTCTTTGGCCGCGGCTTCCGCGCCGGCATGGACCGTCGCGAGCAGAAGAAGCTCGCCGCCAAGAACGAGAAGGAGATGCGCGAGCAAATCCGCAAGAAGGACGGCCTCGAGGAGAAGCCCGAGGAGGCCGACGCCCAGCGGCGCAAGGAGGCCGCCGCCGACCTCTACGACACGTTCGACATGCGCGTGGACCGCCACTGGAGCGAGAAGAAGCTGGAAGAGATGACTGAGAGGGATTGGCGCATCTTCAGAGAAGACTACAACATCTCCTACAAGGGTTCCAAGATTCCTCGCCCCATGAGGAGCTGGATCGAGAGCAAGTTGAGCCTGGAGCTCTTGAAGGCTGTGGAGAAGGCTGGCTATAAAACCCCTTCTCCGATTCAGATGGCAGCCATTCCCCTTGGCTTGCAGCAGCGTGATGTCATTGGCATTGCCGAGACTGGTTCCGGGAAAACCGCGGCGTTTGTGCTTCCCATGTTGAGCTACATCACCAGGCTTCCTCCCATGAGCGAGGACAACGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCCCCCACTCGCGAGCTCGCGCAGCAGATCGAGGATGAGACTGTTAAGTTTGCGCAGTATTTGGGCATCAAGGTGGTGTCCATTGTTGGTGGACAATCCATTGAGGAGCAAGGGTTTAAGATCAGGCAGGGTTGTGAGATTGTCATTGCAACTCCTGGACGTTTGATTGATTGCTTGGAGCGGCGCTATGCTGTTCTCAACCAGTGCAATTATGTTGTTCTCGATGAGGCGGATCGCATGATTGACATGGGGTTTGAGCCCCAGGTGATGGGTGTCCTCGATGCCATGCCTTCCAGCAATCTCAAACCGGAGAATGAGGACGAGGAGCTTGATGAGAAGAAGATTTACCGGACCACTTATATGTTCAGTGCCACCATGCCCCCTGCTGTTGAGAGGCTTGCTAGGAAATATTTGAGGAACCCTGTTGTCGTCACCATTGGCACTGCTGGAAAGGCAACTGATTTGATTAGCCAGCATGTGATCATGATGAAGGAGTCTGAGAAATTTTACAAGCTTCAGAGATTGCTTGACGAGCTTAACGACAAGACTGCGATTGTGTTTGTCAACACCAAGAAGAATGCGGATATGGTTGCCAAGAATTTGGATAAGGAAGGGTATCGAGTGACTACTTTGCATGGAGGGAAGTCGCAGGAGCAGAGAGAGATTAGTCTTGAAGGCTTTAGGACCAAGAGATATAATGTTCTTGTTGCGACTGATGTTGCCGGACGTGGGATTGACATACCTGATGTGGCTCATGTTATCAACTACGATATGCCTGGGAATATTGAAACGTACACTCACCGTATTGGGCGTACTGGTCGTGCAGGAAAGACTGGTGTGGCTACAACATTCTTGACTCTTCAGGACAGTGATGTCTTTTATGACCTCAAGCAGATGCTCATTCAAAGTAATAGTCCTGTTCCACCTGAACTAGCGAGGCATGAAGCTTCAAAATTCAAGCCAGGATCGATTCCTGATAGACCACCTAGACGAAATGACACTGTTTTTGCGCATTAG 2226 0.5481 MKRSNDDVANPSTVKPTFLTKAQREQLALQRRQEEVAEQKRRQEQLLSRNHSSDPKPSSDRDRDRERDRDRDNRERDRDRDRDRDRERARDRDRDREPERRNREREREEETRSRERARSDKLAERERARDRDREAERRNREREREEETRARERARLEKLAEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKDGLEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWIESKLSLELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEDNEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFYKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIETYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQMLIQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFAH* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00054 741 MobiDBLite consensus disorder prediction 27 180 - -
Lapu3g00054 741 Pfam DEAD/DEAH box helicase 346 536 IPR011545 GO:0003676|GO:0005524
Lapu3g00054 741 MobiDBLite consensus disorder prediction 716 741 - -
Lapu3g00054 741 SMART ultradead3 340 562 IPR014001 -
Lapu3g00054 741 Gene3D - 552 739 IPR027417 -
Lapu3g00054 741 Pfam Helicase conserved C-terminal domain 573 679 IPR001650 -
Lapu3g00054 741 Coils Coil 233 259 - -
Lapu3g00054 741 FunFam probable ATP-dependent RNA helicase DDX23 282 551 - -
Lapu3g00054 741 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 352 547 IPR014001 -
Lapu3g00054 741 MobiDBLite consensus disorder prediction 709 741 - -
Lapu3g00054 741 Coils Coil 125 169 - -
Lapu3g00054 741 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 321 349 IPR014014 GO:0003724
Lapu3g00054 741 CDD DEADc_DDX23 332 548 - -
Lapu3g00054 741 FunFam probable ATP-dependent RNA helicase DDX23 552 740 - -
Lapu3g00054 741 MobiDBLite consensus disorder prediction 232 270 - -
Lapu3g00054 741 CDD SF2_C_DEAD 559 688 - -
Lapu3g00054 741 MobiDBLite consensus disorder prediction 1 184 - -
Lapu3g00054 741 Coils Coil 19 49 - -
Lapu3g00054 741 SMART helicmild6 598 679 IPR001650 -
Lapu3g00054 741 MobiDBLite consensus disorder prediction 7 26 - -
Lapu3g00054 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 700 IPR027417 -
Lapu3g00054 741 Gene3D - 282 551 IPR027417 -
Lapu3g00054 741 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 574 718 IPR001650 -
Lapu3g00054 741 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 476 484 IPR000629 -
Lapu3g00054 741 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 255 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00054 Lapu-Chr3 910049 915768 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00054 331 700 Eukaryotic Initiation Factors Gene Family AT1G72730 33.962 3.32e-60 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00054 K12858 - gmx:100792810 1185.63