Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00047 ATGGCAGATGTTGAGGTTGATGTGGCGGCAGGAGCACAGCCGAAGAAGAGAACATTCAAGAAGTTCAGTTTCAGAGGTGTGGATCTGGACGCGCTTCTTGACATGTCCACTGATGAACTCGTCAAGCTCTTCAGTGCCCGTGCTCGTAGAAGGTTCCAGAGAGGGCTTACCAGAAAGCCCATGGCTTTGATTAAGAAGCTCCGCAAAGCGAAAAGGGAAGCACCAGCAGGTGAAAAGCCAGAGCCTGTGCGCACTCATCTGCGCAACATGATTATTGTCCCTGAGATGATCGGTAGCATCATTGGAGTATACAATGGCAAGACCTTCAATCAAGTTGAAATCAAACCCGAAATGATTGGCCATTATCTCGCTGAGTTTTCAATTTCATACAAACCTGTCAAGCACGGTAGACCTGGTATTGGTGCTACTCACTCGTCTAGGTTCATTCCTCTCAATTTGGTTTACTGGCATGCGATTATGGAACAACTCGTCCCATTGAGAGTGTAA 507 0.4734 MADVEVDVAAGAQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLNLVYWHAIMEQLVPLRV* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00047 168 FunFam 40S ribosomal protein S15 9 152 - -
Lapu3g00047 168 Gene3D 30s Ribosomal Protein S19; Chain A 8 152 IPR023575 GO:0003735|GO:0005840|GO:0006412
Lapu3g00047 168 ProSitePatterns Ribosomal protein S19 signature. 105 129 IPR020934 GO:0003723
Lapu3g00047 168 PRINTS Ribosomal protein S19 family signature 105 117 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lapu3g00047 168 PRINTS Ribosomal protein S19 family signature 85 104 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lapu3g00047 168 PRINTS Ribosomal protein S19 family signature 117 132 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lapu3g00047 168 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 9 151 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lapu3g00047 168 NCBIfam 30S ribosomal protein S19 19 151 IPR005713 GO:0003735|GO:0006412|GO:0015935
Lapu3g00047 168 Hamap 30S ribosomal protein S19 [rpsS]. 48 141 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lapu3g00047 168 Pfam Ribosomal protein S19 50 135 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lapu3g00047 168 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 8 152 IPR002222 GO:0003735|GO:0005840|GO:0006412
Lapu3g00047 168 SUPERFAMILY Ribosomal protein S19 55 136 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00047 Lapu-Chr3 861070 862449 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00047 1 151 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 88.079 1.19e-92 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00047 K02958 - gmx:100801408 290.812