Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00043 ATGGATCCTATCAATCTCGCCAACAACCCTAATCTTGCTTCCAGACAGCGTTTACGCTGGACGAATGAGCTACACGAACGCTTTGTTGATGCAGTTGCACAACTTGGTGGTCCAGATCGTGCTACTCCTAAAGGGGTCCTCAGAGTTATGGGTGTACAGGGATTAACAATATACCATGTCAAAAGCCACTTACAGAAATATCGGCTAGCAAAATACCTACCTGACTCCTCCTCAGATGGGCAAAAAGGGGACAAGAAAGAAACAGAGGATACGCTTTCCAATTTAGATGGTTCACCTGGGATGCAGATTTCTGAAGCACTAAAGCTGCAAATGGAGGTGCAGAAGCGACTGCATGAACAATTGGAGGTGCAGCGACAGCTACAATTGCGGATAGAAGCCCAAGGTAAATACTTGAAGAAGATTATTGAAGAGCAACAGAGACTCGGTGGGGTTCTTTCAGAAGCATCTGACTCTGGGGTTGCGGCTCCAATTCCAGGAGATATGTGCCAAGAATCTGATGGTAAGACTGACCCAGCAACCCCTGCCCCAACCTCTGAGTGTCTTCTGGAAAAAGCTTCGAAAGAGCATGCCCCAGATAAGAGTCTTTCAATTGATGAATCTTTTTCGTCTCACCATGAGCCAATGACACCAGACTCTTGTTGTCACGTTGGTTCCCCTACTAACAGCCGTAAAGGGGAGAGATCTTCGAAAAAGCAACGGCTTAGCATGGTGCTTCCGTCCGAGATACTTGAGTCAAGCATGTCATCATATCAGCAAACAAACACAATTTTCCTTTCCCAAGAACAATTTGTTCCTTCATTGGGTATGTCTGCAGGAAGCGATAAGGCGCTCGAGCAGGATGGTAACAGTAGTCTCTGTGATTAA 885 0.4621 MDPINLANNPNLASRQRLRWTNELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGQKGDKKETEDTLSNLDGSPGMQISEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLGGVLSEASDSGVAAPIPGDMCQESDGKTDPATPAPTSECLLEKASKEHAPDKSLSIDESFSSHHEPMTPDSCCHVGSPTNSRKGERSSKKQRLSMVLPSEILESSMSSYQQTNTIFLSQEQFVPSLGMSAGSDKALEQDGNSSLCD* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00043 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 15 291 IPR044848 GO:0003700
Lapu3g00043 294 Gene3D - 14 73 - -
Lapu3g00043 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 72 IPR017930 -
Lapu3g00043 294 MobiDBLite consensus disorder prediction 189 207 - -
Lapu3g00043 294 FunFam Myb family transcription factor 14 72 - -
Lapu3g00043 294 Coils Coil 104 124 - -
Lapu3g00043 294 Pfam Myb-like DNA-binding domain 18 68 IPR001005 -
Lapu3g00043 294 MobiDBLite consensus disorder prediction 74 100 - -
Lapu3g00043 294 NCBIfam myb-like DNA-binding domain, SHAQKYF class 16 70 IPR006447 GO:0003677
Lapu3g00043 294 MobiDBLite consensus disorder prediction 78 92 - -
Lapu3g00043 294 Pfam MYB-CC type transfactor, LHEQLE motif 101 147 IPR025756 -
Lapu3g00043 294 MobiDBLite consensus disorder prediction 162 241 - -
Lapu3g00043 294 SUPERFAMILY Homeodomain-like 14 69 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00043 Lapu-Chr3 823870 827299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00043 50 283 G2-like Transcription Factor Family AT2G01060 62.449 2.17e-90 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lapu3g00043 Myb_DNA-binding 1.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00043 - - cave:132172761 417.542