Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00035 ATGAGTGAAAGAATATTAGTAGTTCTGCTGCTTGTTTTGAATTATTTGTTGGTTGCAGAAGGAGAAACAGCTGATGAGGATTTGACCGCACTTAAGTCTCTTGCAAGTACTTGGAAGAACACCCCTCCTGATTGGGTGGGTTCGGATCCTTGTGATGATTGGGAAGGAATCAAGTGCAATAATACACGTGTTACGTCAATAACACTATCAAGTACTTGTTTGGGTGGTCAGCTTTCTGGAGATATTGGATCACTGTCTGAGTTGGAGATTTTGGATCTATCTTACAACAAGGACCTGACTGGACCACTTCCGCAATCCATCGGGGAGCTGAGGAAGCTCTCAATCTTAATTCTTGTTGGTTGTAGCTTCAGTGGTCCTATTCCAGACAGCATAGGAAATCTGCAGGAGCTCCTCTCCTTGTCTTTAAATTCCAATGGCTTCAGTGGACCAATTCCGCCTTCTATTGGTAATCTATCAAAGCTTTATTGGTTAGATTTAGCAGAAAATCAACTTCAAGGGAACATCCCGGTATCTAGTGACGATACATTTGGTCTCGATAACTTGTACAATGCCAAACATTTTCATCTTGGGAAGAATAATCTGTCAGGCACTATCCCTCCTCGACTTTTTAGCTCAGAAATGGTTCTGATTCATTTGCTTCTGGAAAGCAATAATCTCTTAGGCAACATTCCATCTACACTTGGACTAGTTAAGAGTCTGGAGGTGCTGCGCTTAGATAGAAATTCATTAGATGGACCTGTGCCTCCAAACATCAGCAATCTTACGAATGTTCGAGAACTGCACTTGTCCAACAATAATCTGTCAGGCTCCCTGCCAAACCTTACTGGAATGAATGCCCTCAGATACCTGGACATGAGCAACAATAGTTTTAAACCATTGGATTTTCCAGGATGGTTTTCCACTCTCGAGTCCTTAACGACATTAAAGATGGAGAGAACACAACTTCAAGGACAGGTTCCCACTTCTTTGTTTGGAATTGCCAATTTACAGACTGTGGTGCTAAAAGACAACAAAATAAATGGAACCTTGGATGTGGACTCCTCCTACAGCAGCAAGCTGCAACTTGTTGATTTGGAGACTAATTCAATTGACAGCTTTAAGCAAAATGGTGAAGTTTCATCAGATGTCAAGATAATACTTAAAGATAACCCATTTTGCCAAGAACTCGATGAACGAGGCACATACTGCTCCTCTTCTCAACCCAATGTCTCGTATTCAACGCGACCAAATAACTGTGAACCTGTTACCTGCAGTTCAGAACAGATTTCGAGTCCCAATTGTATATGCGCATATCCATATACAGGAGCCTTAGCTTTCAGGTCACCTTCCTTTTCGGACTTGGATAACGTAACACACTATTCAATGCTTGAGGAGTATCTTATGCGGTCTTTTAAGTCTCATTTTGTACCTGTGGATTCGGTTTTGTTGAGCCATCCAAGTACGGATTCAACTAGTTATCTCAAATTGAGCTTACAAGTCTTCCCATCAGGACTAGATCATTTCAATCGAACAGGGACTTCAAGAATTGGTTTTATGCTAAGCAACCAGACTTTTAAGCCTCCACCCGATTTTGGACCATTTTATTTTCTTGCAGATAGATATGGATACTTTGGGAACTATGAAGGATTGAATGGATCGGGTAAACATTTAAACATTGGAATCATAATTGGGGCAGCAGTTGGTGGTTTGGTCTTGCTAGTGTTATTACTCTTAGCTGGTCTTTATGCTTTCCGCCAGAAGAAAAGAGCCGAAAAAGCGATTGGACAAAGCAATCCTTTCAGACGCTGGGATACGGTTGATAGCAAGAGTGATGTCCCTCAGTTGAAAGAAGCAAGAATGTTTTCTTTTGAAGACGTTAAAAAGTACACCAAAAGTTTTTCTCAAGTCAATGACATTGGATCTGGGGGTTTTGGGAAGGTTTATAAGGGAACCCTTCCCAATGGACAATTGATAGCAATAAAAAGAGCTCAAAAAGAATCTATGCAGGGAAAGCTTGAGTTTAAAGCTGAGATTGAACTTCTGTCGAGAGTTCACCATAAGAATCTTGTGAGCCTTTTGGGCTTCTGCTTTGACCAAGGAGAGCAAATGCTGATTTATGAGTATCTTCGAAATGGAAGCTTAAAGGATGCTCTCTCAGGGAAGTCAGGAATTAGGTTGGATTGGATTAGAAGGCTAAAAATTTCCCTTGGTACTGCCCGAGGTTTGGCTTATCTTCACGAACTTGTTAATCCTCCCATCATACATAGGGACATCAAATCAAACAATATTTTGCTGGATGACCGCCTAACTGCCAAAGTTTCTGATTTTGGTCTCTCCAAGTCTATGGTAGATTCAGAAAAAGATCATGTTACCACTCAAGTTAAAGGAACACTGGGTTACTTGGATCCAGAGTATTATATGTCTCAACAACTGACCGAGAAGAGTGACGTGTATAGCTTTGGAGTGCTAATGTTGGAGCTGATATCTGCAAGAAGGCCATTGGAACGAGGGAAGTATATTGTGAAAGAGGTCAGGAATGCACTGGATAGGACAAAAGGCTTATACGGTCTTCATGAATTTATTGATCCAGCCATTGGATTATCGTCCACAACACTGATCGGTTTTGACAAGTTTGTGAATTTGACCTTGAAATGTGTTGAAGAGTCAGGTGAAGAAAGGCCTAAAATGAGTGATGTGGTAAGAGAAATCGAGAACATATTGAGGTCAACTGGTGCAAACCCTACCGAGGAATCACCCTCCATCTCTTCTAGCTATGAAGAGGTAAGCCGAGGGAGTTCCAGCCATCCTTATAATAGCAATGACACCTTTGATTTGAGTGCAGGATCTCCATATCCAAAAGTTGACCCTAAGTAG 2874 0.4134 MSERILVVLLLVLNYLLVAEGETADEDLTALKSLASTWKNTPPDWVGSDPCDDWEGIKCNNTRVTSITLSSTCLGGQLSGDIGSLSELEILDLSYNKDLTGPLPQSIGELRKLSILILVGCSFSGPIPDSIGNLQELLSLSLNSNGFSGPIPPSIGNLSKLYWLDLAENQLQGNIPVSSDDTFGLDNLYNAKHFHLGKNNLSGTIPPRLFSSEMVLIHLLLESNNLLGNIPSTLGLVKSLEVLRLDRNSLDGPVPPNISNLTNVRELHLSNNNLSGSLPNLTGMNALRYLDMSNNSFKPLDFPGWFSTLESLTTLKMERTQLQGQVPTSLFGIANLQTVVLKDNKINGTLDVDSSYSSKLQLVDLETNSIDSFKQNGEVSSDVKIILKDNPFCQELDERGTYCSSSQPNVSYSTRPNNCEPVTCSSEQISSPNCICAYPYTGALAFRSPSFSDLDNVTHYSMLEEYLMRSFKSHFVPVDSVLLSHPSTDSTSYLKLSLQVFPSGLDHFNRTGTSRIGFMLSNQTFKPPPDFGPFYFLADRYGYFGNYEGLNGSGKHLNIGIIIGAAVGGLVLLVLLLLAGLYAFRQKKRAEKAIGQSNPFRRWDTVDSKSDVPQLKEARMFSFEDVKKYTKSFSQVNDIGSGGFGKVYKGTLPNGQLIAIKRAQKESMQGKLEFKAEIELLSRVHHKNLVSLLGFCFDQGEQMLIYEYLRNGSLKDALSGKSGIRLDWIRRLKISLGTARGLAYLHELVNPPIIHRDIKSNNILLDDRLTAKVSDFGLSKSMVDSEKDHVTTQVKGTLGYLDPEYYMSQQLTEKSDVYSFGVLMLELISARRPLERGKYIVKEVRNALDRTKGLYGLHEFIDPAIGLSSTTLIGFDKFVNLTLKCVEESGEERPKMSDVVREIENILRSTGANPTEESPSISSSYEEVSRGSSSHPYNSNDTFDLSAGSPYPKVDPK* 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00035 957 Gene3D Transferase(Phosphotransferase) domain 1 709 928 - -
Lapu3g00035 957 FunFam Leucine-rich repeat protein kinase family protein 181 280 - -
Lapu3g00035 957 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 709 919 - -
Lapu3g00035 957 ProSiteProfiles Protein kinase domain profile. 633 907 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00035 957 FunFam Leucine-rich repeat protein kinase family protein 599 708 - -
Lapu3g00035 957 SUPERFAMILY L domain-like 58 406 - -
Lapu3g00035 957 MobiDBLite consensus disorder prediction 908 946 - -
Lapu3g00035 957 Gene3D Phosphorylase Kinase; domain 1 604 708 - -
Lapu3g00035 957 Gene3D Ribonuclease Inhibitor 282 437 IPR032675 -
Lapu3g00035 957 SMART serkin_6 633 907 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00035 957 FunFam Leucine-rich repeat family protein 26 180 - -
Lapu3g00035 957 CDD STKc_IRAK 639 906 - -
Lapu3g00035 957 ProSiteProfiles Leucine-rich repeat profile. 263 285 IPR001611 GO:0005515
Lapu3g00035 957 SUPERFAMILY Protein kinase-like (PK-like) 619 937 IPR011009 -
Lapu3g00035 957 MobiDBLite consensus disorder prediction 906 957 - -
Lapu3g00035 957 ProSitePatterns Protein kinases ATP-binding region signature. 639 661 IPR017441 GO:0005524
Lapu3g00035 957 Pfam Protein tyrosine and serine/threonine kinase 636 902 IPR001245 GO:0004672|GO:0006468
Lapu3g00035 957 Gene3D Ribonuclease Inhibitor 22 181 IPR032675 -
Lapu3g00035 957 Gene3D Ribonuclease Inhibitor 182 281 IPR032675 -
Lapu3g00035 957 PANTHER RECEPTOR-LIKE PROTEIN 55 36 906 - -
Lapu3g00035 957 Pfam Leucine Rich repeats (2 copies) 262 300 IPR025875 -
Lapu3g00035 957 ProSitePatterns Serine/Threonine protein kinases active-site signature. 753 765 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00035 Lapu-Chr3 754012 759978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00035 1 957 Receptor kinase-like Gene Family AT5G49760 56.029 0.0 986
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Lapu3g00035 PK_Tyr_Ser-Thr 4.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00035 - - gmx:100811702 1517.29