Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00032 ATGGCAATAGCACCCGCAAACTCATCACCCACCATGAGTCTCAGCCACAGCCAGAGCCAAGAGGACGCCACCACCGCCTCCACCACCAACGACCACAACCACAATAATAACAACAACGACAACAAGCCCGATGATCACGACCATGACATGGTTATGCCCGGTTTTCGCTTCCACCCAACTGAGGAAGAGCTCGTCGAATTCTACCTTCGCCGTAAGGTGGAGGGAAAGCGTTTCAACGTTGAGCTCATTACTTTCCTCGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGCCTTGGCAGCTATTGGTGAGAAGGAGTGGTACTTCTATGTGCCGAGAGATCGAAAGTATCGCAACGGTGATCGTCCCAATCGTGTCACAACCTCTGGTTATTGGAAGGCAACAGGAGCTGATAGGATGATCCGAACCGAGAATTTTCGCTCCATCGGCCTCAAGAAAACCCTAGTTTTCTATTCCGGGAAAGCTCCCAAAGGCATACGAACTAGTTGGATTATGAACGAGTATCGCTTGCCGCAACATGAAACCGAACGATATCAAAAGGCTGAGATATCGCTCTGCCGTGTGTACAAGAGAGCTGGAGTAGAGGACCATCCCTCCCTCCCTCGCTGTCTCCCCACAAGGCCATCTTCATCAAGAGCTTCTTCACACTCTGAAAATAAGAAGCACAACGAAATGGTTCATCACAACATGGGATTTGTGGGACAATCGAAGCCAACTGAACACATGGTTGACAAAATGAATGAAACGGAAGCAAGCAGTGACGTGAACACGGCTCTTGGACTTTCCAAATACAATGCTTACCGTGCTGCAATGGGTGCACTCAGCACCACAATGGCACTTCCAGTTGTTCCGATGGACGAGGAAGGGTTGATGATGATGCAGCATCAGCAGCAATCTAAGCAAGCAGCAGCACATGCAGGTGCTCCGGGTATTGGCGCAATCTTCTCTGCGGGGCCTTCCACTTCCAATAACAATGGAGTTGTGAACATGGATGATCTTAACAGACTAATGAGTTACCAGCAGCAGTACTACAATGTTCAAAGCCATCCCAATCAGTTCTCTACTTTGCTGATGCAACCATCACCAGTAGTGTCTCTCAGCTCGCTACCAAATCCACTTCCGACCACCTTCTCTGACCGACTGTGGGAGTGGAATCCAATCCCCGAGCCACCAAATCAAGAGTACAGCAACATGTCCTTCAAGTAA 1227 0.4939 MAIAPANSSPTMSLSHSQSQEDATTASTTNDHNHNNNNNDNKPDDHDHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKAEISLCRVYKRAGVEDHPSLPRCLPTRPSSSRASSHSENKKHNEMVHHNMGFVGQSKPTEHMVDKMNETEASSDVNTALGLSKYNAYRAAMGALSTTMALPVVPMDEEGLMMMQHQQQSKQAAAHAGAPGIGAIFSAGPSTSNNNGVVNMDDLNRLMSYQQQYYNVQSHPNQFSTLLMQPSPVVSLSSLPNPLPTTFSDRLWEWNPIPEPPNQEYSNMSFK* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00032 408 SUPERFAMILY NAC domain 51 197 IPR036093 GO:0003677|GO:0006355
Lapu3g00032 408 MobiDBLite consensus disorder prediction 1 36 - -
Lapu3g00032 408 MobiDBLite consensus disorder prediction 1 54 - -
Lapu3g00032 408 FunFam NAC domain-containing protein 35 60 201 - -
Lapu3g00032 408 Gene3D NAC domain 60 201 IPR036093 GO:0003677|GO:0006355
Lapu3g00032 408 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 49 280 - -
Lapu3g00032 408 MobiDBLite consensus disorder prediction 204 228 - -
Lapu3g00032 408 MobiDBLite consensus disorder prediction 37 54 - -
Lapu3g00032 408 ProSiteProfiles NAC domain profile. 51 198 IPR003441 GO:0003677|GO:0006355
Lapu3g00032 408 Pfam No apical meristem (NAM) protein 53 177 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00032 Lapu-Chr3 725862 728694 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00032 37 224 NAC Transcription Factor Family AT2G02450 77.778 6.31e-114 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu3g00032 NAM 4.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00032 - - vum:124824712 682.945