Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00029 ATGGAAGGAGTACCGCACCCAGTACCCAGAACTGTCGAAGAGGTTTTCACCGACTTTAAGGGCAGACGCTCTGGTTTGATTAAGGCCCTCACCACCGACGTTGAAAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAATCTGTGTCTATATGGGTTTCCAAATGAAACTTGGGAAGTAAATTTGCCTGTTGAGGAAGTGCCTCCTGAACTTCCCGAGCCAGCATTAGGTATAAACTTTGCCAGGGACGGCATGCAAGAGAAGGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGCTGCTTGCTGTTGCTTTCTACTTTGGTGCCCGCTTTGGATTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAGATGATAAATGATCTGCCAACAATCTTCGAACTTGTGACTGGAAGTGTTAAGCAATCAAAGGATCAACCAGCTGCTCACAACAATGGTAGCAAATTTAAATCAAGTGGAAAGGTGTCCCGTCAGTCTGATTCTCAAGCCAAGGGGATGAAGATGTCTGCACCACCTAAAGAGGAGGATGAGAGTGGAGAGGAGGAAGAAGAAGATGACGAACAAGGTGCAACATGTGGTGCTTGCGGTGATAATTATGGCACTGACGAATTCTGGATCTGTTGTGATATGTGTGAAAGATGGTTCCATGGTAAATGTGTTAAAATTACTCCCGCTAAGGCTGAGCACATCAAGCAATACAAGTGCCCCAGCTGCAGTAACAAGAGGGTTAGAGTTTGA 762 0.4567 MEGVPHPVPRTVEEVFTDFKGRRSGLIKALTTDVEKFYQQCDPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFELVTGSVKQSKDQPAAHNNGSKFKSSGKVSRQSDSQAKGMKMSAPPKEEDESGEEEEEDDEQGATCGACGDNYGTDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRVRV* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00029 253 CDD PHD_AL_plant 200 249 IPR044104 -
Lapu3g00029 253 SUPERFAMILY FYVE/PHD zinc finger 188 250 IPR011011 -
Lapu3g00029 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 248 IPR013083 -
Lapu3g00029 253 MobiDBLite consensus disorder prediction 144 199 - -
Lapu3g00029 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Lapu3g00029 253 FunFam PHD finger alfin-like protein 192 248 - -
Lapu3g00029 253 MobiDBLite consensus disorder prediction 183 198 - -
Lapu3g00029 253 SMART PHD_3 199 247 IPR001965 -
Lapu3g00029 253 PANTHER CPG BINDING PROTEIN 9 252 IPR045104 GO:0006355|GO:0042393
Lapu3g00029 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Lapu3g00029 253 Pfam PHD-finger 200 249 IPR019787 -
Lapu3g00029 253 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Lapu3g00029 253 MobiDBLite consensus disorder prediction 144 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00029 Lapu-Chr3 704848 712635 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00029 1 250 Alfin-like Transcription Factor Family AT1G14510 80.800 1.58e-132 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lapu3g00029 Alfin 2e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00029 K26274 - gmx:100807826 484.182