Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00028 ATGTCAGAAATGCGGGTATCCGAGCTTCACTTGAAAAAGGAACTCACCCAAATCCGCAAGGCTGCCCGAGTTCTCAGAGATCCTGGCACCACATCCTCTTGGAAGTCACCACTCAGTTCATCAAGATCCGTGGCTGCATGGAACCGAGACAGTGGAAGTAGAAGGTTCAGCACCAATTCTCAACTTGCCAACAATGACAAGGAGAAAGAGAAGGAGAGGGAGAAAAAGGTGTTCTTGTACAATTGGAAGAACTACAAATCTTCGAGTGAGAAATACAACGAGGAAGAAGAAGATGACGATGATGGTGATGATGGGGGTGGATCTTCGTCGCTTCTTGGGGACAGAGACAGAGACAGTTTGAGTGATGCTCGCAATGGTTGTGACTCTAAGAGTGATACGTACCTGGCTGGTGGTGGTACTGGTGGCGGTGGTGGCACTCGTTCTTCTATTTTCAGATGTGGGGATGCCAATCTTGTTTCCAGAAGAACAGTCCCCGTTAAGAAAAAGAGTAAGAAAAATAGCCCTCATTTTGATTTTTTAGCAAAGTATCAACAACGAGGACAAACGAATCCAGGAAGAAGTTTTGTGAGTTCTTCGAAGGCATTGCTAGAGGGGCATTCTTCTTTGCCTTTTTTTAGCAGGGATGACTCTGTTGAGTTCTCTGATGATACCGAGGATTACACTAATTCTGAGGGCGTGAGACCAATTTCGGGGACTTCCCCTTTGCTTTTCAAACTCAGGCAAAAGAATTGGTCTCGCTCTTCCTCTAAGTTTTTGAGAAGAAGTCGGAAAGAGGACTCTTCTTATTCTTATAGCACCCCTGCATTGTCAACTAGTTCTTACAATAGGTACGGTCACCGTTATCCCAGCACCCTTGGATCCTGGGATGGCACCACCACTTCCGTGAATGATGGCGATGGAGATGATGAGATTGATGACCATTTGGATTTGCCTGGCCGCCAAGGATGTGGAATCCCTTGCTATTGGTCCAAGAGGACTCCTAAACATAAAGGGATGTGTGGGAGTTGTTATTCTCCCTCACTGTCCGACACTTTGAGGAGGAAAGGGAGTAGCATGCTCTGTGGAAGCCAAACTATTTATCCCAGACACCGCCGGTCGGCTTCGGCCTCTCAGAAGAGAAGACTTTCTCAGAGGAGTGCTCGAGGTGTCATTCCATTACTCACAAACAGTGGTGATGCTAGAGAAGGGTCGTCTGTAGGAACAGGAAGGAGCGATGATGAACTTTCCACAAACTTTGGGGAACTTGATCTTGAGGGATTGAGCCGGTTGGACGGAAGAAGGTGGTCGTCTAGTTGTAGGAGCCAAGAGGGATTGGAGATTGTAGCTCTCAATGGAGAAGGGGAAGATGAGGGCACGCCAGAAAACAGTCGCTGTTTTAGCCAAAAGTATAGGCCAATGTTCTTTGGTGAACTGATTGGGCAGAATATTGTTGTTCAGTCACTCATCAATGCTGTTTCCAGGGGACGAATAGCTCCTGTCTATCTGTTTCAAGGTCCCCGTGGGACTGGCAAAACGTCAACCGCAAGGATATTTGCTGCTGCCTTGAACTGTGCAAGTCCTGATGAGAGTAAGCCTTGTGGCTACTGCAGGGAATGCACTGATTTGATTTCTGGTAAGAGCAGTGATCTATTGGAAGTTGATGGAACCAATAAGAGAGGAATTGATAAGGCTAGATATCTCCTAAAAAGATTGTCAACTGGGTCATCATCAGCCTCACCTCAATATACAGTTTTTGTTATTGATGAGTGTCACTTGTTGCCCTCCAAGACATGGCTGGGATTTCTCAAGTTTCTGGAAGAACCACCCCAGCGAGTTGTATTCATATTTATAACATCTGATCTTGACAATGTACCACGAACAATACAATCTCGATGCCAAAAGTACCTTTTCAATAAAATTAAAGATGGGGATATTGTGACCAGGCTGAGGAAAATATCTACTCAGGAGAACCTTGATGTTGAAGCAGATGCACTGGACCTCATTGCTATGAATGCAGATGGTTCACTTCGAGATGCAGAAACAATGTTGGAACAACTTAGTTTGCTGGGGAAGAGAATTACTACTTCTCTTGTCAATGAACTTGTAGGAGTTGTTTCAGATGAAAAATTATTGGAACTTTTGGAGTTGGCAATGTCATCTGATACTGTAGAGACAGTGAAAAGAGCCAGAGAATTGATGGACTCGGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCCGGCCTTATCATGGACATCATTGCTGGGTCATATGCAGTCATCGACACCAGACCTGATGATTCGTTCTTTGGTGGACGGAGCTTGAATGAATCAGAGTTGGAGAGGCTAAAAAATGCTTTGAAGCTTCTCTCAGAGGCTGAGAAACAGTTAAGGACATCCAGTGAACGCTGTACATGGTTCACAGCAACTCTATTGCAGCTTGGTTCTACACCTTCTCCTGATCTCACACAGTCAAGCAGCAGTAGGAGGCAGAGCGGCAAGACAACTGAAGATGATCCGTCAAGTGTTTCTAGAGATGTTACCTCTTTCACGCACAAGTCAGACCCTCAATATGTGCCTCGAAAGTCAGCATACACTGGATCCCAGCAAAAGGCCGTAAATGATAATTCCAACAATCAAAAGGATATATCATCAAAGATTGAAGGTTTCAGCTTGAAATCAAAGCCATCAAACAGCCCAGTCGTAGATGATGGCTCCACAGTTGTATCATCTGATGATCTTATGGTGGGGAATACAATGTATAGGTGCATAGATTCGGCGAAGTTATGTGACATATGGGTGCATTGTATTGAGAAGTGTCACTCTAAGACATTGAGGCAGCTGCTACACCATCACGGAAAGCTTGTGTCTGTATGCGAAGTAGAAGGTGTTTTGGTAGCATATGTTGCTTTTGGAGACGCAGATATTAAAGTTCGCGCTGAGAGGTTTTTAAGAAGCATTACAAACTCCATGGAAATGGTTCTCAGGCGCAATGTGGAGGTCCGAATAATCCACTTGGGAGATGGGGAAGGTGAAAACCAGGTTAATCTAACAGGTGTAAAGCGGGGTGAGTCAATAGTGGCTTGTGAGAAGGAACAAAGACAAGGTCATGTGAATGGAACGGAGTCTTATTCTAGTTTGCCTCCTTTACTGGACAGAAACCTTCAATCTACTACTGCTTCATCAGATATCTTGGGTGAAGGAAATGGTGGGAGGGAGAGGAGACAGGATAATCCAATGCATCGAATTGAATCCATCATTCGTGAACAGAGGCTGGAAACTGCCTGGTTACAGGCCGTAGAAAAAGGTTCCCCTGGATCATTAAATCGTTTGAGACCAGAGAAGAATCAAGTACTGCCGCAGAATGGTGTAGACCCAATGGAGTCCATGGATTCAACGAGATTTTCCTCTCACCAGCATTGGGAAGATGACCCCAATAAAGTTTTGACCCTTAAAAATGGAAGGGTTCCACAGAAGGATCAGACTGGTAGAAAGGCAGATCGTTTTCCCATGTCCCCAAGTTTGTTGCATGACAACAGTTTAGCAACTATTTCTGGAAAAGACCATCCGGGATATGAATCAGGGTCGGGAGCAGGTGGTTGTGGATTTTTGTGTTGGAATAAGTCGAAGCCAAGAAGGGTGATAAAGGTGAAAGGTGGGACCCCAGTTAGAGCGCATAGAGGTGCAAGTTTTAGATTGTTTGGTGAGTGCGGTAAGGCAAAGAAAAAGATAAGAAAGGATTGA 3744 0.4498 MSEMRVSELHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAWNRDSGSRRFSTNSQLANNDKEKEKEREKKVFLYNWKNYKSSSEKYNEEEEDDDDGDDGGGSSSLLGDRDRDSLSDARNGCDSKSDTYLAGGGTGGGGGTRSSIFRCGDANLVSRRTVPVKKKSKKNSPHFDFLAKYQQRGQTNPGRSFVSSSKALLEGHSSLPFFSRDDSVEFSDDTEDYTNSEGVRPISGTSPLLFKLRQKNWSRSSSKFLRRSRKEDSSYSYSTPALSTSSYNRYGHRYPSTLGSWDGTTTSVNDGDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHKGMCGSCYSPSLSDTLRRKGSSMLCGSQTIYPRHRRSASASQKRRLSQRSARGVIPLLTNSGDAREGSSVGTGRSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEDEGTPENSRCFSQKYRPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCASPDESKPCGYCRECTDLISGKSSDLLEVDGTNKRGIDKARYLLKRLSTGSSSASPQYTVFVIDECHLLPSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTQENLDVEADALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYAVIDTRPDDSFFGGRSLNESELERLKNALKLLSEAEKQLRTSSERCTWFTATLLQLGSTPSPDLTQSSSSRRQSGKTTEDDPSSVSRDVTSFTHKSDPQYVPRKSAYTGSQQKAVNDNSNNQKDISSKIEGFSLKSKPSNSPVVDDGSTVVSSDDLMVGNTMYRCIDSAKLCDIWVHCIEKCHSKTLRQLLHHHGKLVSVCEVEGVLVAYVAFGDADIKVRAERFLRSITNSMEMVLRRNVEVRIIHLGDGEGENQVNLTGVKRGESIVACEKEQRQGHVNGTESYSSLPPLLDRNLQSTTASSDILGEGNGGRERRQDNPMHRIESIIREQRLETAWLQAVEKGSPGSLNRLRPEKNQVLPQNGVDPMESMDSTRFSSHQHWEDDPNKVLTLKNGRVPQKDQTGRKADRFPMSPSLLHDNSLATISGKDHPGYESGSGAGGCGFLCWNKSKPRRVIKVKGGTPVRAHRGASFRLFGECGKAKKKIRKD* 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00028 1247 Coils Coil 773 803 - -
Lapu3g00028 1247 MobiDBLite consensus disorder prediction 368 417 - -
Lapu3g00028 1247 Pfam DNA polymerase III, delta subunit 480 640 - -
Lapu3g00028 1247 MobiDBLite consensus disorder prediction 88 148 - -
Lapu3g00028 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 489 687 IPR027417 -
Lapu3g00028 1247 MobiDBLite consensus disorder prediction 817 831 - -
Lapu3g00028 1247 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 468 881 - -
Lapu3g00028 1247 CDD AAA 479 637 - -
Lapu3g00028 1247 Gene3D - 457 638 IPR027417 -
Lapu3g00028 1247 MobiDBLite consensus disorder prediction 817 882 - -
Lapu3g00028 1247 Pfam DNA polymerase III subunits gamma and tau domain III 694 812 IPR022754 GO:0003887
Lapu3g00028 1247 SUPERFAMILY post-AAA+ oligomerization domain-like 711 812 IPR008921 GO:0003677|GO:0006260
Lapu3g00028 1247 NCBIfam DNA polymerase III subunit gamma/tau 465 814 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Lapu3g00028 1247 MobiDBLite consensus disorder prediction 842 882 - -
Lapu3g00028 1247 MobiDBLite consensus disorder prediction 1157 1188 - -
Lapu3g00028 1247 MobiDBLite consensus disorder prediction 1059 1079 - -
Lapu3g00028 1247 SMART AAA_5 497 647 IPR003593 GO:0016887
Lapu3g00028 1247 MobiDBLite consensus disorder prediction 398 415 - -
Lapu3g00028 1247 CDD HLD_clamp_pol_III_gamma_tau 640 703 IPR045085 -
Lapu3g00028 1247 Gene3D - 642 703 - -
Lapu3g00028 1247 MobiDBLite consensus disorder prediction 26 73 - -
Lapu3g00028 1247 MobiDBLite consensus disorder prediction 29 63 - -
Lapu3g00028 1247 FunFam DNA polymerase III subunit gamma/tau 461 639 - -
Lapu3g00028 1247 FunFam DNA polymerase III subunit gamma/tau 641 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00028 Lapu-Chr3 693931 701860 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00028 461 755 Core DNA Replication Machinery Family AT1G21690 24.671 2.52e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00028 - - gmx:100791561 2096.24