Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00025 ATGGAACTTTCGAGTCAAGAAGGAGAAATCCCAATCCCAATCCCAATAAATAGCACTACATATGGTGGGGGACATGGTAATGGACACGGTCATGGTCTCATGATTCACCACGACCCTCCACACCACAACCACGGCCACAACCACATTATCTCCTCCACGGTACCTTCAAACGGCACACCTGCTATGCAGCAGGAGGATCATGGGTACAAGAAAGTGGTGAGGTACAGAGAATGCCTGAAGAACCATGCAGCGGCCATGGGAGGGAATGCCACCGATGGGTGCGGAGAGTTCATGCCGAGTGGAGAAGAAGGCACCATAGAGGCACTCAACTGCTCAGCCTGCCATTGCCACAGAAACTTCCACAGAAAGGAAGTGGAGGGCGAGCCCTCTTCATGTGACTACCACCCCTTCAACAGAAGAAGACTCATTCTGGGCCCTCACAAGAACCTCCTCCCTCCCGAGGCTCTTGGCTACCCTACAGGTAACATCCTTCCTTCTAGAAGTGTCCCACCACACCAGATGATAATGCCCTACAGCATTGGTCACCTCCCTTCAGAGTCTGATGAACAAGAAGACGGTGGAGGAATGGTGCAGCCTAGACCCTCCCAGCTAGTGAAGAAAAGGTTCAGGACAAAGTTCACCCAGGAGCAGAAGGAGAAAATGCTCAACTTTGCTGAGAAGGTGGGGTGGAAAATCCAGAAGCAAGAGGAGTCTGTGGTGCAACAGTTCTGCCAAGAGATTGGGGTCAAGAGAAGAGTGCTCAAGGTTTGGATGCACAACAATAAGCACAATCTCGCCAAAAAGAACCCCCCTACTGCAGCAGCTTAA 828 0.5145 MELSSQEGEIPIPIPINSTTYGGGHGNGHGHGLMIHHDPPHHNHGHNHIISSTVPSNGTPAMQQEDHGYKKVVRYRECLKNHAAAMGGNATDGCGEFMPSGEEGTIEALNCSACHCHRNFHRKEVEGEPSSCDYHPFNRRRLILGPHKNLLPPEALGYPTGNILPSRSVPPHQMIMPYSIGHLPSESDEQEDGGGMVQPRPSQLVKKRFRTKFTQEQKEKMLNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNPPTAAA* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00025 275 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 75 124 IPR006456 -
Lapu3g00025 275 SUPERFAMILY Homeodomain-like 199 267 IPR009057 -
Lapu3g00025 275 Pfam ZF-HD protein dimerisation region 73 125 IPR006456 -
Lapu3g00025 275 FunFam Zinc-finger homeodomain protein 2 196 267 - -
Lapu3g00025 275 MobiDBLite consensus disorder prediction 1 28 - -
Lapu3g00025 275 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 74 125 IPR006456 -
Lapu3g00025 275 NCBIfam homeobox domain, ZF-HD class 206 262 IPR006455 -
Lapu3g00025 275 Gene3D - 195 268 - -
Lapu3g00025 275 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 59 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00025 Lapu-Chr3 670115 673073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00025 1 269 ZF-HD Transcription Factor Family AT1G14440 47.950 1.02e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lapu3g00025 ZF-HD_dimer 1.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00025 - - gmx:100805652 444.506