Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00018 ATGGCATTTTCTGCTTCAACTCACAAATCTGCCGGAGTTCATCCAGGGGCAATCAATGAGGATTTATACAAGGAGCTGTGGCATGCCTGTGCTGGCCCCCTTGTGACTCTCCCTCGTGAAGGGGAGCGAGTTTATTACTTTCCACAAGGTCACATGGAACAGCTGGAGGCGTCAATGTATGAGGGATTGGAGCAGCAGATGCCTTCCTTCAATCTGCCTTCTAAAATATTATGTAAAGTGGTCAATGTTCATCTTCGGGCTGAATCTGAAACAGATGAAGTATATGCACAAATAACTTTGCTTCCTGAAGTAGACCAAAGTGAAGTGACCAGCCCTGATGATCCTCTGACTGAATCAACAAGGGTCAAGATCCATTCATTTTGCAAGACACTTACTGCTTCTGATACCAGTACCCATGGGGGTTTCTCTGTTCTTCGAAGACATGCTGACGATTGTCTGCCTCCATTGGATATGTCACAACAACCACCATGGCAAGAATTGGTTGCAACTGATTTACATGGGAATGAATGGCATTTTAGACATATTTTTCGAGGGCAACCGAAGCGCCACTTACTTACTACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCCTTTATATTCTTAAGGGGTGAAAATGGAGAGCTGCGAGTTGGGGTGAGGAGGGTGATGAGACAGCAGAGCAATGTGCCTTCTTCTGTTATATCTAGTCACAGCATGCATCTAGGTGTTCTGGCCACTGCATCTCACGCCATTGCCACTGGAACACTGTTTTCTGTGTTTTACAAACCCAGAACAAGCCGGTCAGAATTTATTGTGAGCGTCAACAAGTATCTGGAAGCTCAGAGTCATAAACTCTCTGTTGGGATGAGATTCAGAATGAGATTTGAGGGTGATGAAATTCCCGAAAGAAGGTTCAGTGGCACAATTGTGGGTGTTGGAGATAATAAATCATTGGTGTGGCCTGATTCTGAATGGCGATCATTAAAGGTGCAATGGGATGAACCATCATCAATTTTGCGCCCTGATAGAGTTTCTTCATGGGAATTGGAACCACATGTGTCCGCCACTCCTGCAAACCCGCAGCCAACCCAAAGAAACAAGAGGGCACGACCTGTCATTCTACCTTCTACAATGCCTGATTCTTCTTTGCAAGGCATGTGGAAATCTCCCGTTGAATCTACATCTTTTTCTTATGGTGATCCTCAACATGGACGTGGCCTCTATCCATCGCCCAAGTTCAATCCTTCTGCAACTAACTTTCTTGGTTTTAGTGGGAATAGCTTTGTTGGACCTCCTTCCAACAAATCAATATATTGGTCTAATAGGATGGAAAATTCCTTGGAATCAATTTCAGCCGTAGCCCTTAAAGAAGCTGGAGAGAAGAGACAAGGCACTGGAAATGGCTGCAGACTCTTTGGGATTCAGCTACTTGAGAATTCTAATGCAGAAGGAAGTCTACAAACAGTCACTTTGTCTGGAAGGCTAGGAGATGATAGGTGTGTTCCATTTTTTGATGCTGAATCTGATCAGCATTCTGAACCATCAAATGCCAATCGATCTGATGTTCCTTCAGTAAGTTGTGATGCTGAAAAATCATGCCTGTCTCCCCATGAGTTGCAAAGCAGGCAAATAAGGAGCTGTACGAAGGTTCACATGCAAGGAATGGCTGTTGGGAGGGCTGTGGATTTAACACGATTTTATGGATATGAGGATCTGCTCAGAAAATTCGAAGAGATGTTTGACATCGAGGCTGAGCTCTGTGGGTCCATCAAGAAATGGCAGGTTGTCTACACTGATAATGAAGATGATATGATGATGGTTGGAGACGATCCCTGGGATGAGTTCTGTAGTGTTGTGAGGAAAATTTTCATCTACACGGCAGAGGAGGTGAAGAAGCTTTCCCCGAAAATAGGACTTCCAATGAATGAAAAATTGAAAGCAAACAAGCAGGATTCTGAAGCAATAACCAATCCCGAGGAGCAGTCATCCAATGTGGGGCCCAGTTGCTAG 2028 0.4453 MAFSASTHKSAGVHPGAINEDLYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMYEGLEQQMPSFNLPSKILCKVVNVHLRAESETDEVYAQITLLPEVDQSEVTSPDDPLTESTRVKIHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPKRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRVMRQQSNVPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFRMRFEGDEIPERRFSGTIVGVGDNKSLVWPDSEWRSLKVQWDEPSSILRPDRVSSWELEPHVSATPANPQPTQRNKRARPVILPSTMPDSSLQGMWKSPVESTSFSYGDPQHGRGLYPSPKFNPSATNFLGFSGNSFVGPPSNKSIYWSNRMENSLESISAVALKEAGEKRQGTGNGCRLFGIQLLENSNAEGSLQTVTLSGRLGDDRCVPFFDAESDQHSEPSNANRSDVPSVSCDAEKSCLSPHELQSRQIRSCTKVHMQGMAVGRAVDLTRFYGYEDLLRKFEEMFDIEAELCGSIKKWQVVYTDNEDDMMMVGDDPWDEFCSVVRKIFIYTAEEVKKLSPKIGLPMNEKLKANKQDSEAITNPEEQSSNVGPSC* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00018 675 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 640 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lapu3g00018 675 SMART B3_2 127 229 IPR003340 GO:0003677
Lapu3g00018 675 Gene3D - 546 640 - -
Lapu3g00018 675 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Lapu3g00018 675 SUPERFAMILY CAD & PB1 domains 554 628 - -
Lapu3g00018 675 MobiDBLite consensus disorder prediction 653 675 - -
Lapu3g00018 675 FunFam Auxin response factor 125 229 - -
Lapu3g00018 675 SUPERFAMILY DNA-binding pseudobarrel domain 120 256 IPR015300 -
Lapu3g00018 675 ProSiteProfiles PB1 domain profile. 551 644 IPR000270 GO:0005515
Lapu3g00018 675 Pfam AUX/IAA family 598 641 IPR033389 -
Lapu3g00018 675 CDD B3_DNA 125 227 IPR003340 GO:0003677
Lapu3g00018 675 MobiDBLite consensus disorder prediction 657 675 - -
Lapu3g00018 675 Gene3D - 124 229 IPR015300 -
Lapu3g00018 675 FunFam Auxin response factor 290 362 - -
Lapu3g00018 675 FunFam Auxin response factor 546 640 - -
Lapu3g00018 675 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Lapu3g00018 675 Pfam Auxin response factor 253 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lapu3g00018 675 Gene3D - 290 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00018 Lapu-Chr3 589916 600879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00018 5 674 B3 DNA Binding Superfamily AT1G59750 67.804 0.0 903
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lapu3g00018 B3 8.6e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00018 K14486 - gmx:100815450 1238.79