Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01858 ATGGAAACAGCTCTCACTTGCTTCTTCTGTGGCAGAGTCCCACCACCCGCAGCTGCAACTCACCACTTCCCTTTTTACAATGTCTCCGTTCACCTCCGTTCTTCCTATGGGCCCTACCGCCCAATTCGAAGCTCCTCTAACACCAGCCAAGTTAATGTTTCCACCAACTCCAAAACTCGAAGAAGGAGAAGAAGAAGTTCTCAGACTCAGTTGCTTCTGGATGAGGCTGCTGCTGTCAATCACAACGGAGACCCAATCGGTAAGAAGGATCTCGGCAGGAGTGTCATGAGATGGATTCGCGACAGCATGAGGGCCATGGCTTCTGATTTAGCTGCGGCGGAGATGCTGGGAGAGATGGAGCTGTGGGAGCTCATGGGCCCGGGTCTCACTTTTATTATGCAGGCACAGCCCTATCTGAATGCTGTTCCTATGCCCATTGGCCTTGAAGGTATTTGCTTGAAGGCCTGCACGCACTACCCCACTCTATTCGACCATTTTCAGAGAGAGCTTCGCGCTGTTCTCCAACACCTGCAGAACGACAAGTCCATTCCTGACTGGCGGGACACCAAGTCTTGGAAACTGCTTAAGCAGCTCGCCAATTCAGCTCAGCATAGAGCAGTTGTGAGAAAGATAACACAACCTAAGAGTGTCCAAGGCGTTTTAGGAATGGACTTGGGAAAGATCAAAGCAATACAGCACAGGATTGATGAATTCACCAATCACATGTCAGAACTACTCTGTGTCGAAAGGGATGCTGAATTGGAGTTTACTCAGGAGGAATTGGATGCCGTTCCTAAACCAGATGATGCTTCTGATTCCTCAAAACCTATTGATTTCTTGGTTAGTCATAGCCAGCCTCAACAAGAACTCTGTGACACCATTTGCAATTTAAATGCCATCAGTACCTCTACAGGACTTGGGGGAATGCATTTGGTGTTATTCAAGGTTGAAGGGAACCACCGGTTACCACCTACTGCTCTTTCACCTGGAGACATGGTTTGCGTAAGAACGTATGACAGCAGGGGTGCAATTACAACTTCTTGCATACAGGGATTTGTAAACAGTTTTGGAGATGATGGCTATAGTATTACAATTGCTTTGGAGTCACGCCATGGTGATCCTACATTCTCTAAACTATTTGGGAAGAATGTGCGTATTGACCGTATTCAAGGACTGGCTGATACACTTACCTATGAGCGCAACTGTGAAGCTCTAATGCTGCTTCAGAAGAATGGTTTGCGTAAGAAGAATCCTTCAATTTCTGTTGTTGCTACACTGTTTGGAGACGGGGAAGATGTTGCATGGCTAGAAAAGAATCATTTCGCCAACTGGGCAGAAGAAAAATCTGATGGAATTTTAGGAAGTGAAAACTTTGATGATTCTCAACGGAGAGCAATTGCACTGGGTTTGAATAAAAAGAGGCCTGTATTGGTTATCCAAGGCCCTCCTGGTACAGGCAAGACTGGTTTGCTCAAGCATCTTATAGCATGTGCTGTTCAGCAAGGTGAAAGGGTTCTTGTTACAGCACCTACTAATGCAGCTGTAGATAACATGGTTGAAAAGCTTTCAAATGTCAGATTAAATGTTGTGCGGGTTGGAAATCCAGCTCGCATATCAAAAACAGTGGGATCAAAGTCTTTGGAAGAAATTGTAAATGCTAAGCTTGCAAGTTTTCGAGAAGAGTACGAGAGGAAGAAGTCAGATCTAAGAAAAGATCTAAGACATTGTTTAAGGGATGATTCACTAGCTGCGGGCATACGCCAACTTCTGAAGCAGCTGGGAAGGTCACTGAAGAAAAAGGAAAAGCAGACCGTAAATGAAGTTCTATCTAGTGCTCAGGTTGTGCTTGCCACTAATACTGGAGCGGCTGACCCTTTGATTCGAAGGCTAGATACTTTTGACTTGGTCGTCATAGATGAAGCTGGACAGGCAATTGAACCCTCTTGCTGGATTCCTGTATTGCAAGGAAAGCGGTGTATTCTTGCTGGTGATCAATGCCAACTTGCTCCCATCATATTATCTAGAAAGGCCTTGGAAGGTGGTCTAAGAATATCTCTATTGGAAAGAGCTGCAACTTTGCATGAAGGGATTCTCACCACTAGGTTAACTACACAGTACCGTATGAATGATGCTATTTCTAGTTGGGCTTCAAAGGAGATGTACGGAGGATTGTTGAAGTCCTCTGAGACTGTATTTTCTCATCTTCTTGTAGACTCTCCTTTTGTTAAGCCTACCTGGATAACACAATGCCCACTACTATTGTTAGATACCAGAATGCCATATGGAAGTCTGTCAGTTGGTTGCGAAGAACATCTAGATCCAGCTGGAACAGGCTCACTTTATAATGAAGGAGAAGCCGAGATAGTTTTGCAGCATGTCTTTTCCTTAATTTATGCTGGTGTTAGCCCAGCTGCTATTGCAGTGCAGTCCCCCTATGTTGCTCAAGTACAACTTTTGAGGGACAGGCTTGATGAATTTCCAGAAGCTGCAGGTACAGAGGTTGCAACCATTGACAGTTTTCAAGGTCGGGAAGCTGATGCAGTAATTTTATCTATGGTACGATCAAACACATTGGGAGCTGTTGGATTCCTCGGGGATAGCAGAAGAATCAATGTTGCCATCACAAGAGCACGCAAACATTTAGCTTTGGTCTGCGACAGCTCCACTATATGCCACAATACCTTCTTAGCAAGACTTCTTCGTCATATTAGACACTTTGGTAGGGTGAAGCATGCAGAACCAGGTAGTTTTGGAGGATACGGACTTGGGATGAATCCAATATTACCCTCCATTAATTAG 2799 0.4494 METALTCFFCGRVPPPAAATHHFPFYNVSVHLRSSYGPYRPIRSSSNTSQVNVSTNSKTRRRRRRSSQTQLLLDEAAAVNHNGDPIGKKDLGRSVMRWIRDSMRAMASDLAAAEMLGEMELWELMGPGLTFIMQAQPYLNAVPMPIGLEGICLKACTHYPTLFDHFQRELRAVLQHLQNDKSIPDWRDTKSWKLLKQLANSAQHRAVVRKITQPKSVQGVLGMDLGKIKAIQHRIDEFTNHMSELLCVERDAELEFTQEELDAVPKPDDASDSSKPIDFLVSHSQPQQELCDTICNLNAISTSTGLGGMHLVLFKVEGNHRLPPTALSPGDMVCVRTYDSRGAITTSCIQGFVNSFGDDGYSITIALESRHGDPTFSKLFGKNVRIDRIQGLADTLTYERNCEALMLLQKNGLRKKNPSISVVATLFGDGEDVAWLEKNHFANWAEEKSDGILGSENFDDSQRRAIALGLNKKRPVLVIQGPPGTGKTGLLKHLIACAVQQGERVLVTAPTNAAVDNMVEKLSNVRLNVVRVGNPARISKTVGSKSLEEIVNAKLASFREEYERKKSDLRKDLRHCLRDDSLAAGIRQLLKQLGRSLKKKEKQTVNEVLSSAQVVLATNTGAADPLIRRLDTFDLVVIDEAGQAIEPSCWIPVLQGKRCILAGDQCQLAPIILSRKALEGGLRISLLERAATLHEGILTTRLTTQYRMNDAISSWASKEMYGGLLKSSETVFSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSVGCEEHLDPAGTGSLYNEGEAEIVLQHVFSLIYAGVSPAAIAVQSPYVAQVQLLRDRLDEFPEAAGTEVATIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHLALVCDSSTICHNTFLARLLRHIRHFGRVKHAEPGSFGGYGLGMNPILPSIN* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01858 932 CDD SF1_C_Upf1 708 904 IPR047187 -
Lapu2g01858 932 Pfam AAA domain 684 887 IPR041679 -
Lapu2g01858 932 Gene3D - 393 690 IPR027417 -
Lapu2g01858 932 Gene3D - 706 914 IPR027417 -
Lapu2g01858 932 MobiDBLite consensus disorder prediction 39 69 - -
Lapu2g01858 932 FunFam DNA-binding protein SMUBP-2 isoform X2 261 392 - -
Lapu2g01858 932 SMART AAA_5 473 688 IPR003593 GO:0016887
Lapu2g01858 932 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 70 915 - -
Lapu2g01858 932 MobiDBLite consensus disorder prediction 39 56 - -
Lapu2g01858 932 Gene3D - 286 392 - -
Lapu2g01858 932 Pfam AAA domain 458 674 IPR041677 GO:0004386
Lapu2g01858 932 SMART ultradead3 454 706 IPR014001 -
Lapu2g01858 932 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 457 894 IPR027417 -
Lapu2g01858 932 Coils Coil 559 579 - -
Lapu2g01858 932 CDD DEXXQc_SMUBP2 457 707 - -
Lapu2g01858 932 FunFam DNA helicase A 706 914 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01858 Lapu-Chr2 32165933 32177073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01858 452 647 Core DNA Replication Machinery Family AT1G08840 26.263 7.34e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01858 - - gmx:100799347 1613.97