Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01853 ATGGATTTGGACCAGTGGATCTCCAAGGTGAAGGATGGCCAGCACCTTCTTGAAGACGAGCTTCAACTTCTCTGCGAATATGTTAAAGAGATCCTTATTGAGGAGTCAAATGTGCAGCCTGTCAATAGTCCAGTGACGGTTTGTGGTGATATTCACGGTCAGTTTCATGATCTGATGAAACTTTTCCAGACTGGGGGTCATGTGCCCGAGACAAATTACATTTTTATGGGAGATTTTGTTGATCGGGGTTACAATAGTCTTGAAGTATTCACCATCCTTTTACTTCTAAAAGCTAGATACCCAGCTAATATTACCCTTCTACGTGGAAACCATGAAAGTAGGCAACTAACACAGGTCTACGGATTTTATGATGAATGCCAGAGGAAGTACGGGAATGCTAATGCTTGGCGATATTGTACAGATGTTTTTGACTATCTTACACTTTCTGCAATTATAGATGGAACTGTAAATCACTTTTTACTCTCTCCATCAGTCTTTCTATTTTCCATATGCGCATGTAGGCAGTGCTCCAGGTACTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGAACAATTGATCAGGTTCTCTCTCTACCCTTCGCTTTCAGTTGTTGGTCTAGCTCAATATTTTCTTAGTTTCAGTGATCCTGAAGATATTGAAACATGGGCAGTCAGTCCCCGTGGAGCTGGTTGGCTTTTTGGATCCCGGGTTACTTCTGAGTTCAATCACATAAACAATCTTGATCTTGTTTGTCGAGCACACCAACTTGTTCAAGAAGGTCTTAAATATATGTTCCAGGATAAGGGCCTTGTAACTGTATGGTCTGCGCCTAATTACTGTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGGAGAGAGAGGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGAGGCCCCAGGACAGGCGTTCCTTATTTCTTATAA 975 0.4133 MDLDQWISKVKDGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVNHFLLSPSVFLFSICACRQCSRYFVFMVAFLQTFEQLIRFSLYPSLSVVGLAQYFLSFSDPEDIETWAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTETEENNQMRGPRTGVPYFL* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01853 324 SMART pp2a_7 16 308 IPR006186 GO:0016787
Lapu2g01853 324 PRINTS Serine/threonine phosphatase family signature 270 286 IPR006186 GO:0016787
Lapu2g01853 324 PRINTS Serine/threonine phosphatase family signature 106 130 IPR006186 GO:0016787
Lapu2g01853 324 PRINTS Serine/threonine phosphatase family signature 44 71 IPR006186 GO:0016787
Lapu2g01853 324 PRINTS Serine/threonine phosphatase family signature 141 167 IPR006186 GO:0016787
Lapu2g01853 324 PRINTS Serine/threonine phosphatase family signature 247 267 IPR006186 GO:0016787
Lapu2g01853 324 PRINTS Serine/threonine phosphatase family signature 73 100 IPR006186 GO:0016787
Lapu2g01853 324 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 2 324 IPR047129 GO:0004722
Lapu2g01853 324 Pfam Calcineurin-like phosphoesterase 44 256 IPR004843 GO:0016787
Lapu2g01853 324 Gene3D - 1 324 IPR029052 -
Lapu2g01853 324 SUPERFAMILY Metallo-dependent phosphatases 2 307 IPR029052 -
Lapu2g01853 324 ProSitePatterns Serine/threonine specific protein phosphatases signature. 107 112 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01853 Lapu-Chr2 32135833 32144314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01853 43 242 Calmodulin-binding Proteins AT5G63870 37.037 1.25e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01853 K15498 - qlo:115967759 541.576