Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01832 ATGGGACGTGGAAAGATTGAGATAAAGAGGATCGAGAACACCACCACAAGGCAAGTTACCTTCTCCAAAAGAAGAGGTGGCCTCATGAAGAAGACAAAGGAGCTTTCTGTGCTTTGTGATGCACAGATCGGGATCATCATCTTCTCCAGCACTGGGAAGATGTGGCAATGGTGCACTGAACCCTTCAGGATGGAGCAGATCATAGAGAAGTACCAGAGATCAACAGGAGCACGTATTGCAGAACGTGACCATCCCCGTGAAGAGTTTATCCATGACATGGCAATGCTGAGGCAAGAAACTCTCCGTCTTGAACTGGGAATTCAAAGATATCTTGGAGAGGACATGGGGTGTTTGCAATACGAGGATTTGACTAAACTTGAACAAGAATTGGAGAATTCTGTGGCAAAGGTTCGAAATCGTCAGAATGAGCTCTTGCAACAGCAAATGGATAATCTGCGAAGGAAGGAAAGGATCTTGGAAGAGGAAAACAATAATTTGTGCAATTGGGAACAGAGAGCAGTGCTGGAGTTTGAGAAGGGTAGAGTGGAAGGAAGCAAAGCAATGCATGTGATGGATGAGTTTCCATTCTTTGAAGAGCAACCTGCTGGAAGCATCCTTCAACTTGCTTCCCCTGTCCTTCCACACTTTCACCCTTATCTTCAGCTCGCACAGCCCAATATCAAGACTCACTCAGGGCCCCACTGTTTCAAGACATGA 717 0.4603 MGRGKIEIKRIENTTTRQVTFSKRRGGLMKKTKELSVLCDAQIGIIIFSSTGKMWQWCTEPFRMEQIIEKYQRSTGARIAERDHPREEFIHDMAMLRQETLRLELGIQRYLGEDMGCLQYEDLTKLEQELENSVAKVRNRQNELLQQQMDNLRRKERILEEENNNLCNWEQRAVLEFEKGRVEGSKAMHVMDEFPFFEEQPAGSILQLASPVLPHFHPYLQLAQPNIKTHSGPHCFKT* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01832 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu2g01832 238 Coils Coil 120 165 - -
Lapu2g01832 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lapu2g01832 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu2g01832 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu2g01832 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu2g01832 238 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Lapu2g01832 238 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Lapu2g01832 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 160 - -
Lapu2g01832 238 Pfam K-box region 85 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu2g01832 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lapu2g01832 238 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lapu2g01832 238 ProSiteProfiles K-box domain profile. 86 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01832 Lapu-Chr2 31936809 31940087 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01832 1 229 MADS-box Gene Family AT5G23260 45.635 4.31e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lapu2g01832 K-box 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01832 - - gmx:100783876 357.066