Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01827 ATGGCTGGTAAAAGTTCAATTACTCCGCCAGCAGCCAGACATGGCACCAAAAAACTGACCAAATATGATTTAGCTGATCTGGAGTGGACCAATAGGATTCCAGAGTGTCCAACATACTACCCATCAAAACATGAGTTTGACCATCCTTTACTTTATCTGCAGAACATAGCTCCTGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCCATTGCAGCCTCTAACCCATCTGCTTTTGTCTTAATGAATGAGCAAAATGATTTCAAGTTTGAAACAAACATACAACCTCTCCGTCTTTCTAAATGGAATGAGAAGGATACAATGAACTTTTCTATGAGTGGCAGAAAATATACGTATCATGAATTTGAGGCTCTCGCAAACAAGACCTTTTTCGGTAGATTTCATTGTTCTGGAGGTCTTCCTTCTTCGTGGGTGGAAAAGGAGTTCTGGCATGAGATGACGCATGGGGAGAAGGGAAAAGTTGAGTATGGAATCAATGTTGAAGGTAGTGCCTTTTCATGCGATCCTGATGACAGGCTTGGAACAAGTAAATGGAATTTGAAGAATTTCTCACGGCTGCTGCAGTCCCCATTACGTTTAGTTGACAAGGAAATTCCAGGAATAACTGATCCTATGCTTTACATTGGAATGCTGTTCAGTATGTTTGCATGGCATGTAGAAGATCATTATCTGTACAGCATAAATTACAGTCACTCGGGTGCAAGTAAAACTTGGTATGGCGTGCCTGGCTATGCAGCCTCTCAATTTGAAAAGGTTGTCTTACAACATGTGTATTGCAATAAGATCTTAACAAAACATGGAGAGGATGGAGCTTTCAGGTTTCTTGCACAAAAAACAACCATGTTCCCACCAAATGTCATGTTACAACATGATGTGAAAGTTTACAAGGCTGTACAGAATCCAGGAGAGTTTATCATCACCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCAGTAAACTTTGCCAATGAGGAGTGGTTTCCAGTTGGGGCTGCAGCTAGCAGGCGTTATGCACTTCTCAGAATGGTGCCTTTAATTCCATATGAGGAACTTCTTTGTAAGGAGGCAATGTCTGTTTACAAGTCCACAAGAATCAGAAGTTCCAAGAACAAGCCTGAAGACACAGCAACTTGTAAAGCTATAGTGCAGCCTTTCTTGCAGCTTATGCAATTTTATAAGACATCCCTTTTGCGACTGAAGAGTTCAAGAAACTTGCAAAGTTCTCCAAATACATCAGGTTTGGTGATATGCCGCATATGCTACAGGGATTGTTATGTAGCTTACCTACTGTGCAAGTGCTGCTTTTCTCATCCAATTTGTCTTTTCCACGACATTGCATCACATACTTGTATGTGTGGAAGATATTATTCTATTTTCATAAGGAATGACATTTTGGAACTGGAAGAAGCTGCCCAAAGTTTTCAACAGGAAAAAAAATGCAAAGAAACATTCTCTCTATTTAGTATATTCTCCTGTAACAGAATTGAATGCATCAAACATCTTGAGGATAATCCTTGGCATGAAGAAAAGAGTGTAAGAGGAACTGCTAATTCTCCAGGAGCAGCATCTAAGCCGAAAACAAAAGTAGCTGACTGCATTAAGCACTGTGTTGAAAGTAAGACAACAATGCAGCACTGGAGAAACAATGGGCTTCCATCTGTGAAGGGTACCAATAAGCCAGAAATCATTTATAACTTGAGAAAACGGAAATCAAATTGA 1764 0.3991 MAGKSSITPPAARHGTKKLTKYDLADLEWTNRIPECPTYYPSKHEFDHPLLYLQNIAPEASKYGICKIVSPIAASNPSAFVLMNEQNDFKFETNIQPLRLSKWNEKDTMNFSMSGRKYTYHEFEALANKTFFGRFHCSGGLPSSWVEKEFWHEMTHGEKGKVEYGINVEGSAFSCDPDDRLGTSKWNLKNFSRLLQSPLRLVDKEIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYSHSGASKTWYGVPGYAASQFEKVVLQHVYCNKILTKHGEDGAFRFLAQKTTMFPPNVMLQHDVKVYKAVQNPGEFIITFPRAYHAGFSHGFNCGEAVNFANEEWFPVGAAASRRYALLRMVPLIPYEELLCKEAMSVYKSTRIRSSKNKPEDTATCKAIVQPFLQLMQFYKTSLLRLKSSRNLQSSPNTSGLVICRICYRDCYVAYLLCKCCFSHPICLFHDIASHTCMCGRYYSIFIRNDILELEEAAQSFQQEKKCKETFSLFSIFSCNRIECIKHLEDNPWHEEKSVRGTANSPGAASKPKTKVADCIKHCVESKTTMQHWRNNGLPSVKGTNKPEIIYNLRKRKSN* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01827 587 ProSiteProfiles JmjC domain profile. 180 353 IPR003347 -
Lapu2g01827 587 FunFam Lysine-specific demethylase isoform A 31 380 - -
Lapu2g01827 587 ProSiteProfiles JmjN domain profile. 36 77 IPR003349 -
Lapu2g01827 587 SMART cupin_9 180 353 IPR003347 -
Lapu2g01827 587 PANTHER LYSINE-SPECIFIC DEMETHYLASE 28 551 - -
Lapu2g01827 587 Gene3D Cupin 36 399 - -
Lapu2g01827 587 Pfam JmjC domain, hydroxylase 213 336 IPR003347 -
Lapu2g01827 587 SUPERFAMILY Clavaminate synthase-like 190 373 - -
Lapu2g01827 587 Pfam jmjN domain 37 69 IPR003349 -
Lapu2g01827 587 SMART JmjN_1 35 76 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01827 Lapu-Chr2 31909967 31913345 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01827 5 492 JUMONJI Transcription Factor Family AT2G34880 30.341 1.96e-61 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lapu2g01827 JmjC 1.5e-38 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01827 - - gmx:100809650 935.636