Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01824 ATGACTCCTCGCGTCGACGATTTCGACAATCTCTCCTCCACCGATGATGACGATGACGACGGCTTCAAGGAGGATATGGCCGCGCTCTCCCGAGCCTGCAGGATTGTTGTCCCAGGCGCCGACGATAATTCCGCCGCCGAAGATGGTGTTCCGTCGGTGGACCCGCTCATTGACGCCAGCGCCGCCACTGCTCCGGTTGCCACCGACTCGGACTCCGATGACCAGGACGACCTGGAATGTCTCAAGAGAGTGCAGAGCCTCTACCAGCCTCTGTCCATTCTTCCGCCGCTTGCGCCGATGGCCATGTCTGACGATGACGATGACGTGGATGACCTCGAGATGGTGCGCGCCATCATGAAAAGGTTTGGCGACTACAACGAAGGTTTGCGTGAAGGTGGAATGAAAATGGTGGTTGAGGAGGATCAGACCTCCAGCATGGGCTGTGAGGGTGACGTTGCTAATGGCTCAGTCCATAACGAATCAGATGGTGGTGAATTATGTCCTGTTTCTCAAGATCTTAATGAGACTGCTACAGAGGAGTTCATTGAAAACATTGAAATGCAGCTTAGTGATTTTGTTGAGAGTGCTGAACCCGATGCCTGGGAGTCATCCAGATTACCAAAAAAAAAATTGAACTGTCCTCCTGTTGTTCAGTGTTTTATTGATGCCATTAAGAAAAATAGGGATTTGCAGAGATTTCTTAGAGGTAAGTTGATTGAGCTTGAGGCTAAAATTGAGGAAAACAAAAAGATAAGGAATAGAATTAAAATTCTTAAGGACTTCCAGGCTTCGTGCACTAGAAGAACAGGGAATGTGTTATCACTGAAAAAAGATCCACGTGCTCAATTAATATCTGCAAAAAGGTCTTCTGCTCGAAAGAACTCTAAGAAACGAAAAAAAGTACCTGCAATGTGTTATGGCCCAGAAGAAAATTCTCATGTAGCTAGTTATAGGATGGTATTGGAAAGATTTCCACTTTCATTGGATCGGAAAAAATGGTCCAAGGTAGAAAGGGAAAATCTTTTGAAGGGAATTAAGCAACAATTCCAAGAAATGGTGCTTCAACTTTCACTTTCAATTGATAGAACTAGTTCAGAGGGCTTGCTTGGAGATGCGGATGACATGGGTAATATAATTGCATCTGTTAAAGATCTTGAAGTCACACCAGAGAGGATTAGAAAGTTTTTACCTAAAGTTAATTGGGATCTAATAGCTTCCATGTATGTTGATGGCCGTAGTGGTGCTGAATGTGAATCAAGGTGGTTGAATTATGAAGATCCTTTGATCAATCAAGGTGCATGGACTAAGGAAGAGGACAGGTCCCTTTTACTTATTGTCCAAGATACAGGCATCAGGAACTGGTTTAATATTGCTGCATCATTGGGCACAAGCAGGACTCCATTTCAATGCTTGTCACGATTCCAGAGGAGCTTAAATCCTTCCATGCTAAATAGTGAATGGACTGAGGAAGAAGATACTCAACTCTGTTCTGCCGTGCAATATTTCGGTGATAGCAATTGGCAGTACGTGGCTTCGGCTTTAGAACGGCGAACAGGAACCCAGTGCTCAAATAGATGGAAAAAATCTCTTTGTCCTGAGAAGAAAGGGAGCTTTACACGAGAGGAGGATGTACGCTTAACAGTAGCAGTGATGCTTTTTGGACGGAAATGGAATCAAATAGCTAAATATGTTCCTGGCCGGATCCAATCTCAGTGTAGGGACAGATACCTCAATAGTCTGGATCCTTGTTTGAAATGGGGTGGATGGACTGAGGAAGAGGATTTAAGATTAGAAGCTGCAATTGCCAAGCATGGATATTGTTGGTCTAAGATTGCTGAAGAAGTGCCTCCCCGTACTGATTCTCAGTGCCGAAAGAGATGGAAGGTGCTATGTCCTGAACAAGTTCCTTTGCTTCAAGAAGCAAGAAAGAAGCAAAGGTCTATCATTGGTAGTAACTTCGTTGATAGAGAATCTGAACGGCCAACAATTACATTTAATGACTTTATACCTTTACTTGCCTTAGCTCCGAAATCTGATGTTGGTGCTTCAAATCTTCACAAGAAGCGCAAGTCAAATAATGTTCCCAAGAAAACAAGTTCTAAGAAACGTGCAAAAAGAACTCGACGTTGTAGCAAAGAAGTACAAAATACAGAGGTACATAACGATGATGAGCTCTACTCGGTCTCTGCGTCTAGCAATCTTCCCAAGAAGAAGACGAGGTTCAAAAGACATACAAAAAGCAGTCGAAATTGTCCCCAAGAATTAGGGGATACATCTTGTAGTGACAAGGTCAAGACTTGCACTGACGGTTCAGAAAACCGATCTACCTGTGTTGCGGATTCTGAAAATCAAGATTTGGACAGCGTAACCCTTTCGTGCTTTATACGCAACAAATCAAATGAGATATTGTCTAGATTTACCAAAAAATTGAGTCAGACTTCCTTCTCCTCTCGGATTACATATTTTCCTGAGCAGGTTGAAAGTCAAAACCCATCTGATGATCAAAGCGGCTTGTCTCAGTCATGTGATACTGTTAGAACTGAAAATTTGTTTGTGCAGCCAAATGTTACTTCTGATAGACGGGTTAGTAACCCGGAGGATACAAATTCTTTGACTAGTGATGATGATGACGATGATATGACCCTTGCCTCCTTTCTGGGAAACAAACCAAAGAAAGAGTGTCAACCTGCTAAAGGACATGGCGTATGCTCTTCCAAATTGAAAACAGCATGTGTATTACTAAATGAAGAACATTGTGCAAGCAAGCCAACTGTCATATCTGATGACAGTGGACCGTCAATGTCAAAGCATGTTGAAGATATGGAGACTGTTTTGCATGGCTGTGTTGCTAAACCACTGGATATCATTGTGGAAGAAAAGGATGACGAACTGTCTACTTCCCCCATGCAAAGCAGGCCAAGGAGGGAGCGAAAACGTCCCAGTAGATTTTTGTAG 2955 0.4335 MTPRVDDFDNLSSTDDDDDDGFKEDMAALSRACRIVVPGADDNSAAEDGVPSVDPLIDASAATAPVATDSDSDDQDDLECLKRVQSLYQPLSILPPLAPMAMSDDDDDVDDLEMVRAIMKRFGDYNEGLREGGMKMVVEEDQTSSMGCEGDVANGSVHNESDGGELCPVSQDLNETATEEFIENIEMQLSDFVESAEPDAWESSRLPKKKLNCPPVVQCFIDAIKKNRDLQRFLRGKLIELEAKIEENKKIRNRIKILKDFQASCTRRTGNVLSLKKDPRAQLISAKRSSARKNSKKRKKVPAMCYGPEENSHVASYRMVLERFPLSLDRKKWSKVERENLLKGIKQQFQEMVLQLSLSIDRTSSEGLLGDADDMGNIIASVKDLEVTPERIRKFLPKVNWDLIASMYVDGRSGAECESRWLNYEDPLINQGAWTKEEDRSLLLIVQDTGIRNWFNIAASLGTSRTPFQCLSRFQRSLNPSMLNSEWTEEEDTQLCSAVQYFGDSNWQYVASALERRTGTQCSNRWKKSLCPEKKGSFTREEDVRLTVAVMLFGRKWNQIAKYVPGRIQSQCRDRYLNSLDPCLKWGGWTEEEDLRLEAAIAKHGYCWSKIAEEVPPRTDSQCRKRWKVLCPEQVPLLQEARKKQRSIIGSNFVDRESERPTITFNDFIPLLALAPKSDVGASNLHKKRKSNNVPKKTSSKKRAKRTRRCSKEVQNTEVHNDDELYSVSASSNLPKKKTRFKRHTKSSRNCPQELGDTSCSDKVKTCTDGSENRSTCVADSENQDLDSVTLSCFIRNKSNEILSRFTKKLSQTSFSSRITYFPEQVESQNPSDDQSGLSQSCDTVRTENLFVQPNVTSDRRVSNPEDTNSLTSDDDDDDMTLASFLGNKPKKECQPAKGHGVCSSKLKTACVLLNEEHCASKPTVISDDSGPSMSKHVEDMETVLHGCVAKPLDIIVEEKDDELSTSPMQSRPRRERKRPSRFL* 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01824 984 Gene3D - 485 533 - -
Lapu2g01824 984 MobiDBLite consensus disorder prediction 853 881 - -
Lapu2g01824 984 SUPERFAMILY Homeodomain-like 482 576 IPR009057 -
Lapu2g01824 984 SUPERFAMILY Homeodomain-like 560 632 IPR009057 -
Lapu2g01824 984 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 426 478 IPR017930 -
Lapu2g01824 984 MobiDBLite consensus disorder prediction 959 974 - -
Lapu2g01824 984 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 581 635 IPR017930 -
Lapu2g01824 984 MobiDBLite consensus disorder prediction 682 755 - -
Lapu2g01824 984 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 535 580 IPR017930 -
Lapu2g01824 984 MobiDBLite consensus disorder prediction 959 984 - -
Lapu2g01824 984 MobiDBLite consensus disorder prediction 689 709 - -
Lapu2g01824 984 ProSiteProfiles Myb-like domain profile. 534 580 IPR001005 -
Lapu2g01824 984 ProSiteProfiles Myb-like domain profile. 479 530 IPR001005 -
Lapu2g01824 984 Gene3D - 428 478 - -
Lapu2g01824 984 ProSiteProfiles Myb-like domain profile. 581 631 IPR001005 -
Lapu2g01824 984 MobiDBLite consensus disorder prediction 1 23 - -
Lapu2g01824 984 Gene3D - 534 586 - -
Lapu2g01824 984 Pfam Myb-like DNA-binding domain 434 495 - -
Lapu2g01824 984 CDD SANT 589 630 IPR001005 -
Lapu2g01824 984 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 13 921 - -
Lapu2g01824 984 SMART sant 329 427 IPR001005 -
Lapu2g01824 984 SMART sant 534 582 IPR001005 -
Lapu2g01824 984 SMART sant 585 633 IPR001005 -
Lapu2g01824 984 SMART sant 483 532 IPR001005 -
Lapu2g01824 984 SMART sant 430 480 IPR001005 -
Lapu2g01824 984 MobiDBLite consensus disorder prediction 721 735 - -
Lapu2g01824 984 ProSiteProfiles Myb-like domain profile. 325 425 IPR001005 -
Lapu2g01824 984 CDD SANT 486 530 IPR001005 -
Lapu2g01824 984 CDD SANT 433 478 IPR001005 -
Lapu2g01824 984 Gene3D - 329 427 - -
Lapu2g01824 984 CDD SANT 537 580 IPR001005 -
Lapu2g01824 984 MobiDBLite consensus disorder prediction 853 869 - -
Lapu2g01824 984 Pfam Myb-like DNA-binding domain 588 629 IPR001005 -
Lapu2g01824 984 Pfam Myb-like DNA-binding domain 535 578 IPR001005 -
Lapu2g01824 984 Pfam Myb-like DNA-binding domain 330 424 IPR001005 -
Lapu2g01824 984 SUPERFAMILY Homeodomain-like 407 475 IPR009057 -
Lapu2g01824 984 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 479 534 IPR017930 -
Lapu2g01824 984 Gene3D - 588 634 - -
Lapu2g01824 984 ProSiteProfiles Myb-like domain profile. 426 478 IPR001005 -
Lapu2g01824 984 ProSiteProfiles SANT domain profile. 589 632 IPR017884 -
Lapu2g01824 984 CDD SANT 388 424 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01824 Lapu-Chr2 31891747 31899626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01824 202 714 MYB-Related Transcription Factor Family AT3G18100 49.049 1.91e-166 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu2g01824 Myb_DNA-binding 9.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01824 K09422 - gmx:778073 1360.13