Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01807 ATGGAGAATAAATCAGAACCTGAGCCTGGTGTTATTGCTGTGCCACCTCTCCAAATTGGCAAGAGAGAGGGAGAGAATGAAGACAATCTGCAAGTGAGTTCAAAGAAGCACAAGAGAGATGTGGTTGCTGAGGACGAAATTGCTTCGGACAATTCTTTTTCAGATTTTGAACCAGATTTGGAGGATGTGGATGCTCATGAGGCTGATTATTCGGAAGAAAGTGATGAAGAAACACAGGAGAAGGTGGAAGTTTTGCCTGAAATGCTATCTTCACCAAATCAACAATATACTGGATCAAGGACTATATATGCTAGAAACTTGTCATATAGCGTGGAACGCACTGATCTGGAAAATCTTTTCAAAGAGTGTGGAGAAATTGCTGATATTCGTCTGCATACAGACCTTGAAGGGAGGTTTAAAGGCTTTGGACATATTGAGTTTGCAACGGCAGACGCCGCACAAAAGGCTCTTCGGTTAAATTATACAGAATTGTTGAGATGTCGTATGAGAGTTGGTATTGCTAGACAAAAGCATGAGTATACTTCCAATAGAAGTTTCCATGGTAATTTTAGCAATTCAATTCAAAGGACTGAAACAACACAGCCTATGAAAGGTTCAGAGATTTCATTGGACTGTGAACAAGAAACTGAGCCCAAAATGCTATCTACACCGAATGAACTCTATGCTGGATCAAAGACTATATGTGCTAAAAACTTGTCATACAGTGTGGAACGCACTGATCTGGAAAATCTTTTCAAAGAGTGTGGAGAAATTGTTGATATTCGTCTACATACGGATCGTGAAGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTGCTACGTCAGAAGCTGCACAAAATGCTCTTCAGTTAAATTATACAGAATTGTTGAGATGTCGAATGAGACTCCGATTGGCTCGACAAAAGGATGAGTATACTTCTAGTAGAAGCAACTGGAGCAAGTCTTTCCTCAAGAGTGAAATAACTCAGCCCATTGAAAGTCCGAAGAGTTCTGAAAACTGTGAAGAGATTGAGGAAAAAACCTCCAGAATTCCTTGGGAAAGTTCTAAAAGGCTACCTACTTTGGAAGCACAAATTGGTCCATCAAAGACAGTATATGTCAGAAACTTATCATACAGTGTTGAA 1146 0.4005 MENKSEPEPGVIAVPPLQIGKREGENEDNLQVSSKKHKRDVVAEDEIASDNSFSDFEPDLEDVDAHEADYSEESDEETQEKVEVLPEMLSSPNQQYTGSRTIYARNLSYSVERTDLENLFKECGEIADIRLHTDLEGRFKGFGHIEFATADAAQKALRLNYTELLRCRMRVGIARQKHEYTSNRSFHGNFSNSIQRTETTQPMKGSEISLDCEQETEPKMLSTPNELYAGSKTICAKNLSYSVERTDLENLFKECGEIVDIRLHTDREGRFRGFGHVEFATSEAAQNALQLNYTELLRCRMRLRLARQKDEYTSSRSNWSKSFLKSEITQPIESPKSSENCEEIEEKTSRIPWESSKRLPTLEAQIGPSKTVYVRNLSYSVE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01807 382 SUPERFAMILY RNA-binding domain, RBD 91 193 IPR035979 GO:0003676
Lapu2g01807 382 SUPERFAMILY RNA-binding domain, RBD 224 318 IPR035979 GO:0003676
Lapu2g01807 382 MobiDBLite consensus disorder prediction 1 79 - -
Lapu2g01807 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 232 308 IPR000504 GO:0003723
Lapu2g01807 382 MobiDBLite consensus disorder prediction 50 79 - -
Lapu2g01807 382 Gene3D - 20 184 IPR012677 -
Lapu2g01807 382 Gene3D - 185 322 IPR012677 -
Lapu2g01807 382 MobiDBLite consensus disorder prediction 21 46 - -
Lapu2g01807 382 SMART rrm1_1 101 172 IPR000504 GO:0003723
Lapu2g01807 382 SMART rrm1_1 233 304 IPR000504 GO:0003723
Lapu2g01807 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 176 IPR000504 GO:0003723
Lapu2g01807 382 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 27 188 - -
Lapu2g01807 382 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 237 301 IPR000504 GO:0003723
Lapu2g01807 382 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 169 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01807 Lapu-Chr2 31741222 31753627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01807 95 335 Eukaryotic Initiation Factors Gene Family AT1G34140 28.049 4.77e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01807 - - vun:114173183 454.907