Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01794 ATGCCAGCAGAATTTTCCAAACCATATCTACACAAGGAAGGAAATGCTATACTTTTTGTTGAACCTGGGAGAACTTGGAAGGTTGAGACAAAGATTAATTACCATGGACAATTAACATTTGCCAGTGGGTGGAGGAAATTTTTGTCGGACCATAAATTGAAAGTTGGTGATGTTTGTGCTTTTGAGCTATTAGACAGTGAAGAATTTGTATTCAAAGTTACCATATATCCTCTAGAAGAGGATTCAAGCACTCCCCTCTTCAAAGGCCCAAAAGGGCTTTCTAATGTGCCTTCTTCATCCCTTAAAACTCCTGTGACCCATAAAGCAAAGACACCAAAGTCCAGGGATGAACTCTATATCTGCATCAAGTCAGAAGAACCGACAATACATATTGAAGATGCGAAGAGGTATGTTGGGGAGAGTGGAAGAAATGTGACTCTTCGTGTTGGAAATAGATCGTGGCAGGTAAAATTGATGCTTTATGGTCAAAATTCATTTGCTAGATTTTCCAGTGGGTGGTTTGAATTTGTGAGAGATTGTAACTTGAAAGAGGGAGATGTTTGTATCCTTAAGATGGTAGATAAGGAAAATCTTGTGATCACTGTTTCATGTTTAAAAGGAACAAAATCATCCACACCTAGGGTCACAATTGACTCTTAG 660 0.3879 MPAEFSKPYLHKEGNAILFVEPGRTWKVETKINYHGQLTFASGWRKFLSDHKLKVGDVCAFELLDSEEFVFKVTIYPLEEDSSTPLFKGPKGLSNVPSSSLKTPVTHKAKTPKSRDELYICIKSEEPTIHIEDAKRYVGESGRNVTLRVGNRSWQVKLMLYGQNSFARFSSGWFEFVRDCNLKEGDVCILKMVDKENLVITVSCLKGTKSSTPRVTIDS* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01794 219 SMART B3_2 120 208 IPR003340 GO:0003677
Lapu2g01794 219 SMART B3_2 5 79 IPR003340 GO:0003677
Lapu2g01794 219 SUPERFAMILY DNA-binding pseudobarrel domain 129 209 IPR015300 -
Lapu2g01794 219 ProSiteProfiles B3 DNA-binding domain profile. 151 208 IPR003340 GO:0003677
Lapu2g01794 219 CDD B3_DNA 1 77 IPR003340 GO:0003677
Lapu2g01794 219 ProSiteProfiles B3 DNA-binding domain profile. 1 79 IPR003340 GO:0003677
Lapu2g01794 219 CDD B3_DNA 132 206 IPR003340 GO:0003677
Lapu2g01794 219 Pfam B3 DNA binding domain 4 75 IPR003340 GO:0003677
Lapu2g01794 219 Pfam B3 DNA binding domain 132 202 IPR003340 GO:0003677
Lapu2g01794 219 Gene3D - 1 80 IPR015300 -
Lapu2g01794 219 Gene3D - 94 208 IPR015300 -
Lapu2g01794 219 SUPERFAMILY DNA-binding pseudobarrel domain 2 76 IPR015300 -
Lapu2g01794 219 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 1 81 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01794 Lapu-Chr2 31620575 31622927 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01794 1 80 REM Transcription Factor Family AT1G49480 31.250 4.33e-07 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu2g01794 B3 1.4e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01794 - - vra:106753565 294.664