Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01791 ATGAAGCCTGACTTGTACGAAATCTCCGACGACGAATGGGAGAACCACTCCTTCAAACCCTCCCGCGTCCTCAAACGGCCTCGCACTTCGTCTCCTCCTTCTCCGCCGCCCATCGAATCCTTCGCCTATACCTCTAAGGTCGACGTTTTAAGCGAAAACGATAGCGATTGCGTTGAAATCGCGCCGAACGGCGCCAATTTCCTCGACGAACTCGAGGACGCCGACGCGGATGACGCCGCCGCCGGTTATGCGGCGGCCTCGCGAGGACGGAGGTTCATTATCGACGACGAAGATGAAGATGCCGAGGAGAACGGCGGAACAGACGGACGCGTGGCGGAATTGTACGAGGTGGAGTCCAGTGAGGGGGAGGAGGAAGTTGAGGAGTTGAACGAAAACGATGTCGTTGGTAGGGCTTTGCATAAGTGTGCGCGAATCTCTGCGGAGTTGAAGGGCGAACTCTTCGGCTCGTCGGGGACCGCGTGCGAGAGGTATTCGGAGGCGGAGTCTTCGTCAGTGAGGATTGTGACTCAGGAGGACGTGGATGTTGCGTGCGCGTCGGAGGATTCGGATTTTCAGCCATTGCTTAAGCCGTATCAGTTGGTTGGTGTCAACTTTTTGCTTCTGTTGTATCGGAAGGGGATTGGAGGAGCCATATTGGCAGATGAAATGGGTCTTGGCAAAACCGTTCAGGCCATCACATATTTAACTTTGTTGAACCGCTTGCACAATGATCCTGGTCCACATCTTATAGTATGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGAGAACTAAAAAGGTGGTGTCCGAACTTTTCTGTTCTTCAATATCATGGTGCTGGACGTGCAGCATACTGCAAGGAGTTGAACTCTCTGTCTAAGGCAGGATTGCCTCCTCCATTTAATGTTCTTCTCGTGTGTTATTCACTTTTTGAACGTCACAGTGCACAGCAGAAAGATGATCGCAAAATTCTGAAGCGGTGGAGATGGAGCTGTGTGTTGATGGATGAGGCACATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATCTGATGTCTGTTGCACGCAATGCCAACCAACGCTTGATGTTGACCGGGACGCCACTTCAAAATGATCTACATGAGTTATGGTCATTGTTGGAGTTTTTGATGCCTGATATTTTTGCTTCTGAAGATGTTGACCTAAAAAAGTTACTAAATGCAGAAGATAGGGATTTAATTGGTCGTATGAAGTCCATCTTAGGACCATTTATTTTGCGGCGACTGAAATCTGATGTGATGCAACAACTTGTTCCAAAAATACAGCAGGTTGAATATGTTATAATGGAAAGGCAGCAGGAATCTGCTTACAAGGAAGCCATTGAAGAGTATCGTGCTGTTTCACAAGCACGGATGGCAAAATCTTCTGAGCTTAATTCAAAAAATTTTCTAGAAGTTCTTCCTCGACGACAAATAAATAACTATTTTGTTCAGTTTCGCAAGATAGCAAATCATCCCTTGTTAATAAGGCGAATCTACAACGATGAGGATGTCATTCGCTTTGCTAGGAAGCTACATCCAATAGGTGCTTTTGGTTTTGAATGTACTTTGGACAGAGTTATTGAGGAACTTAAAAATTACAATGACTTCTCTATTCATCGGCTTTTACTTCATTATGGTGTCAATGATAGAAAGGGGATCCTTCCGGATAAGCATGTTATGCTTTCTGCAAAATGTCGGGCCTTAGCAGAACTTCTTCCTTCACTAAAGAAAGATGGCCATCGAGCCTTGATCTTTAGTCAGTGGACCTCAATGCTTGACATATTGGAGTGGAGTTTGGATGTCATTGGCTTAACCTATAGGCGGCTTGATGGAAGTACACAGGTAGCGGAGAGGCAAACAATAGTTGATACGTTCAATACCGATACTTCAATATTTGCATGCTTACTTTCGACAAGAGCTGGTGGACAGGGCTTAAACTTAACTGGAGCTGATACGGTTGTAATTCATGACATGGATTTTAACCCACAGATTGATAGGCAAGCGGAAGATCGTTGCCACCGAATCGGTCAAACAAAACCTGTAACTATATATCGCCTAGTGACCAAGGGAACGGTTGATGAAAATGTGTATGAGATTGCGAAAAGAAAGCTAGTATTAGATGCTGCCGTTCTCGAGTCCATGGAGGAGATCAATGAAGGTGACATGCCCGAGAAGACCATGGGAGAGATCTTGTCTGCCATTTTATTGAGTTAA 2235 0.4568 MKPDLYEISDDEWENHSFKPSRVLKRPRTSSPPSPPPIESFAYTSKVDVLSENDSDCVEIAPNGANFLDELEDADADDAAAGYAAASRGRRFIIDDEDEDAEENGGTDGRVAELYEVESSEGEEEVEELNENDVVGRALHKCARISAELKGELFGSSGTACERYSEAESSSVRIVTQEDVDVACASEDSDFQPLLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLNRLHNDPGPHLIVCPASVLENWERELKRWCPNFSVLQYHGAGRAAYCKELNSLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFLMPDIFASEDVDLKKLLNAEDRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQQVEYVIMERQQESAYKEAIEEYRAVSQARMAKSSELNSKNFLEVLPRRQINNYFVQFRKIANHPLLIRRIYNDEDVIRFARKLHPIGAFGFECTLDRVIEELKNYNDFSIHRLLLHYGVNDRKGILPDKHVMLSAKCRALAELLPSLKKDGHRALIFSQWTSMLDILEWSLDVIGLTYRRLDGSTQVAERQTIVDTFNTDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESMEEINEGDMPEKTMGEILSAILLS* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01791 744 Gene3D - 195 430 IPR038718 -
Lapu2g01791 744 Pfam Helicase conserved C-terminal domain 571 683 IPR001650 -
Lapu2g01791 744 FunFam Protein CHROMATIN REMODELING 19 isoform A 166 444 - -
Lapu2g01791 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 725 IPR027417 -
Lapu2g01791 744 Coils Coil 112 132 - -
Lapu2g01791 744 PANTHER SNF2/RAD54 HELICASE FAMILY 111 721 - -
Lapu2g01791 744 CDD DEXHc_Snf 195 388 - -
Lapu2g01791 744 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 574 741 IPR001650 -
Lapu2g01791 744 Gene3D - 431 507 IPR027417 -
Lapu2g01791 744 MobiDBLite consensus disorder prediction 1 21 - -
Lapu2g01791 744 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 208 386 IPR014001 -
Lapu2g01791 744 Gene3D - 557 739 IPR027417 -
Lapu2g01791 744 SMART ultradead3 191 396 IPR014001 -
Lapu2g01791 744 MobiDBLite consensus disorder prediction 1 38 - -
Lapu2g01791 744 CDD SF2_C_SNF 561 694 - -
Lapu2g01791 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 421 IPR027417 -
Lapu2g01791 744 Pfam SNF2-related domain 215 501 IPR000330 GO:0005524|GO:0140658
Lapu2g01791 744 SMART helicmild6 600 683 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01791 Lapu-Chr2 31576345 31590255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01791 216 722 RAD5 or RAD16-like Gene Family AT5G22750 27.214 4.29e-48 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu2g01791 SNF2_N 5.1e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01791 K14439 - gmx:100806323 1288.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01791 2 31576345 31590255 Lapu2g01791 2 31576345 31590255 ECH