Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01790 ATGGCTTCTGCTTCCTCATCCACACCCTTCTTGGGAATCAGACAAGAAAATCAAAGTCAGGTTACACAACACCACCAATCCTCCACAGCTGCTTCCTCAACCACCACTTCCACCACTCCAACCACTGTGCCTCAAAAGAAAAGAAGGAATCAACCGGGAACACCATATCCAGATGCCGAGGTGATAGCACTGTCTCCCAAGACTTTAATGGCAACAAACAGGTTTATATGTGAAGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTCCACAGAAGAGGACACAATCTGCCTTGGAAGCTGAAGCAGAAGACTAATAAAGAGCCAAAGAGAAAGGTGTATCTGTGTCCTGAGCCCACATGTGTTCACCATGACCCTTCGAGGGCTCTTGGAGACCTCACTGGCATCAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGACAAATGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAAGCACACTCCAAAACCTGTGGCACCAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCCAGGCGTGACAGTTTTATCACTCACAGAGCCTTTTGTGATGCTCTAGCACATGAGAGTGCAAGACACCCTTCCAACCTGAACCCTTTGGGAACTCATCATCTGTATGGCACAAACCACATGAGCCTAGGCCTTGGTGCACAACTTCAGAACCAAGCTGCTTCTGCCAACAGCTTATTGAGCCTTGGAAGTGCACCAAAGTTTGAGCACTTAATCTCTCCTAATCTGCACCACTCATCTTCATTTGGAGTGCAGTCATCACCCCAGTCATCTTTCTTCATGACTGACCCAAACCAAGCATTTCCAGACCTGCAGTCTCAGCAACAAGGACCCTTATTCTCAACCAAGCAACTCCACGGTCTTATGCAACTCCCTGATCTTCAAGGAACCACCAATAACTCCACCTCTGCTTCATCAGTGTCTGCTTCAGCTAATAACACCAATCTCTTCAATCTCAGCTTCTTTCCTAATACCAATACCAGTGGCAGCATAATGAACGACCAATTCAGTAACATAAGTGGAGGAAATAACCAAGGAACAGCAACACTCTATAGTACTAGTAGCCCTGTAAGTAACCAAGTTGGTTCAGGCTTGTCTTCACTCTTTGGCAATTCATCTCTGCAACAAGATAGCATGTCCCCTCACATGTCAGCCACTGCATTGCTTCAGAAAGCTGCTCAAATGGGTTCAACCACAACCACCAATGGTCCCTCCTCGCTACTGAGAGGAACAGAAGAATTAGGTATAAGGTCAAGGATGGAGAATGAACACAGTAACCATCTACGTGGATTGATGAACTCTCTTGCCAATGGAAACGCTTCCATATTTGGAAATGTGAAAGGGAACGAAAACAACCTTGGCCAGTTTCACAGCGTGGTGGAGGAACCTAAGAAGATGTCACAAAATCTTGGTGTGTGCTTTGGAGGGTCTGATAAGTTGACCTTAGACTTTTTGGGGGTTGGAGGAATGGTCAGAAACATGAACAGTGGTGGGTTTTCACAAAGAGAGCAACAGCACTCCATGGGAACTATGAGCCCCTTGGATCCTAAATTGGAATCAGGACAGGCAAACCAACACTATGGAGCCTCAACACTCTAA 1656 0.4614 MASASSSTPFLGIRQENQSQVTQHHQSSTAASSTTTSTTPTTVPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHESARHPSNLNPLGTHHLYGTNHMSLGLGAQLQNQAASANSLLSLGSAPKFEHLISPNLHHSSSFGVQSSPQSSFFMTDPNQAFPDLQSQQQGPLFSTKQLHGLMQLPDLQGTTNNSTSASSVSASANNTNLFNLSFFPNTNTSGSIMNDQFSNISGGNNQGTATLYSTSSPVSNQVGSGLSSLFGNSSLQQDSMSPHMSATALLQKAAQMGSTTTTNGPSSLLRGTEELGIRSRMENEHSNHLRGLMNSLANGNASIFGNVKGNENNLGQFHSVVEEPKKMSQNLGVCFGGSDKLTLDFLGVGGMVRNMNSGGFSQREQQHSMGTMSPLDPKLESGQANQHYGASTL* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01790 551 SUPERFAMILY beta-beta-alpha zinc fingers 74 171 IPR036236 -
Lapu2g01790 551 SMART c2h2final6 116 146 IPR013087 -
Lapu2g01790 551 SMART c2h2final6 75 97 IPR013087 -
Lapu2g01790 551 SMART c2h2final6 151 171 IPR013087 -
Lapu2g01790 551 MobiDBLite consensus disorder prediction 1 49 - -
Lapu2g01790 551 FunFam protein indeterminate-domain 5, chloroplastic-like 129 208 - -
Lapu2g01790 551 MobiDBLite consensus disorder prediction 1 59 - -
Lapu2g01790 551 MobiDBLite consensus disorder prediction 514 551 - -
Lapu2g01790 551 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 519 IPR031140 -
Lapu2g01790 551 Gene3D Classic Zinc Finger 129 208 - -
Lapu2g01790 551 MobiDBLite consensus disorder prediction 273 292 - -
Lapu2g01790 551 FunFam protein indeterminate-domain 12-like 54 122 - -
Lapu2g01790 551 Pfam Zinc-finger double-stranded RNA-binding 75 97 IPR022755 -
Lapu2g01790 551 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Lapu2g01790 551 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Lapu2g01790 551 Gene3D Classic Zinc Finger 58 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01790 Lapu-Chr2 31558137 31563413 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01790 10 518 IDZ Gene Family AT2G02070 46.552 2.70e-131 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu2g01790 zf-C2H2_jaz 3.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01790 K25870 - gmx:100806198 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01790 2 31558137 31563413 Lapu2g01790 2 31558137 31563413 ECH