Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01789 ATGGCAGCACCTTTTTCTGCAGCATCTCTCTTTGGAATCCGAGAAGAGGATCAGAATCAGATGAAGCAGCAGCATTCCTCAACAACAACACCATCATCCTCATCAACTCCAGCTGCACCACCACCCCAGAAGAAAAGGAGAAACCAACCTGGAACACCAAATCCAGATGCTGAGGTGATAGCACTATCTCCCAAGACTCTAATGGCAACAAACAGGTTTATATGTGAAGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAATCTGCCTTGGAAGCTGAAGCAGAAGACCAATAAAGAGCCAAAGAGAAAGGTGTATCTGTGTCCTGAGCCCACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGCATCAAGAAACACTACTCTCGCAAGCATGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAAGCACACTCCAAAACCTGTGGCACCAGAGAGTATAGATGTGACTGTGGCACTCTCTTCTCCAGACGTGACAGTTTCATCACTCACAGAGCCTTTTGTGATGCATTGGCACAAGAAAGTGCAAGAGAGCCACCCAATTTGAGCAGTGCCATTAGCAACCAGCTATATGGAAACAGTAACAACATGTCCTTAGGCTTATCTCAGAATATGGGTTCTCAGATCCCTTCAGTCCATGACCAAAACTCCCAACCAAGTGACCTTTTGCGTTTTGGTGGTGCACCAAGGACTGGTCAATTTGACCACATTCTCCCACCAAACATTGCCTCACCCTTCAGACCCTCCTCACACCAAACCATGCAAATGCAAAACCCTCCTTTCTTCATGCCAGAATCAAACCAAAACCAGAACCAGAACTACCATGATCACCAACAAGGGTTAATCTCAAACAAGCCATTCCAAGGAATGATACAACTATCTGACCTCAACAACAACACCCCTTCTGGCTCCAACCTCTTCAACCTTCCCTTTCTATCCAACCGAGGCCACACCACCACCCACAACTACTCTGAGGAACAGCACTTCAACACTACTGAAGGGTCAAATTTCTTCGCAGAAGGCGCCATACTTGGCACTGATCACCAAACAAGCTCCGCCACTGCCCCTTCTCTTTTCAGCACCTCTCTTCAAAACAGCACCAACATGTCTCACATGTCTGCAACTGCACTGCTCCAAAAAGCTGCTCAAATGGGTGCTGCAAGTTCCAGCAACAACAACAACAGTGCCTCCTCTCTTCTAAGAAGCTTGGCATCCAAATCCGATCACAGGCCACTCATCAGTGCTGCAAACTACAGCAGCATCTTGAACTCCAGCGTGCAAGAGATGATGAACCTTCCCGGGTTCGAAGCATATGATCATGTCATGAACAAGGAACCAAAACTCAGCGTTGGAGGCTCTGATAGACTCACAAGGGATTTTCTAGGAGTTGCACAGCAGCAACAACAACAACGAGGGTTTAACTTAAGTTCTTTGGAAGCAGACACAAACAATGCTGCGCCGTCAGGTCAATCTTTCGGAGGCGGAGGGAACTTTCAGTGA 1587 0.4726 MAAPFSAASLFGIREEDQNQMKQQHSSTTTPSSSSTPAAPPPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESAREPPNLSSAISNQLYGNSNNMSLGLSQNMGSQIPSVHDQNSQPSDLLRFGGAPRTGQFDHILPPNIASPFRPSSHQTMQMQNPPFFMPESNQNQNQNYHDHQQGLISNKPFQGMIQLSDLNNNTPSGSNLFNLPFLSNRGHTTTHNYSEEQHFNTTEGSNFFAEGAILGTDHQTSSATAPSLFSTSLQNSTNMSHMSATALLQKAAQMGAASSSNNNNSASSLLRSLASKSDHRPLISAANYSSILNSSVQEMMNLPGFEAYDHVMNKEPKLSVGGSDRLTRDFLGVAQQQQQQRGFNLSSLEADTNNAAPSGQSFGGGGNFQ* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01789 528 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Lapu2g01789 528 Gene3D Classic Zinc Finger 127 206 - -
Lapu2g01789 528 FunFam protein indeterminate-domain 5, chloroplastic-like 127 206 - -
Lapu2g01789 528 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Lapu2g01789 528 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 500 IPR031140 -
Lapu2g01789 528 MobiDBLite consensus disorder prediction 226 248 - -
Lapu2g01789 528 FunFam protein indeterminate-domain 12-like 52 120 - -
Lapu2g01789 528 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Lapu2g01789 528 MobiDBLite consensus disorder prediction 1 58 - -
Lapu2g01789 528 MobiDBLite consensus disorder prediction 508 528 - -
Lapu2g01789 528 SMART c2h2final6 73 95 IPR013087 -
Lapu2g01789 528 SMART c2h2final6 149 169 IPR013087 -
Lapu2g01789 528 SMART c2h2final6 114 144 IPR013087 -
Lapu2g01789 528 Gene3D Classic Zinc Finger 52 121 - -
Lapu2g01789 528 Pfam Zinc-finger double-stranded RNA-binding 73 95 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01789 Lapu-Chr2 31543830 31552771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01789 10 501 IDZ Gene Family AT2G02070 49.002 4.96e-132 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu2g01789 zf-C2H2_jaz 3.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01789 K25870 - gmx:100818072 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01789 2 31543830 31552771 Lapu2g01789 2 31543830 31552771 ECH