Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01784 ATGGAAAAGGTGGCTGCGCCTCCGATTCTCATGCAGCGGAAGCGCGATCTGTCGTACGGCGTCGTTTCGGGCAGTCCGGCCGACACCTGGAAGTGGGAGTGGGACAGCGTGCGTTTCGCGGGGAAGCCTCCCAGCGACGACGTCGTGTTCGAGGAGGAGAGCGTCGCGGCGGTGGCTCCTCTGCAGCTGAATCTCGCCGGCAGGGTCAGCGGCGGCGCCAACAAGAGAGTGCGCTCGGGGTCTCCCGGAACGGCGTCGTATCCGATGTGTCAGGTGGATAACTGCAGGGAGGATCTGTCCAAGGCGAAGGACTATCACCGGAGGCACAAAGTGTGCGAGGCTCATAGCAAAGCCTCCAAGGCCCTTCTCGCCAACCAAATGCAAAGGTTTTGTCAGCAGTGTAGTAGGTTTCACCCGCTGTCCGAGTTTGACGAGGGCAAACGGAGCTGCCGCCGGAGACTCGCCGGACACAACCGCCGCCGCAGGAAAACGCAGCCGGAGGATGTCACTTCCGCCACGCCGGCCCCCGCCGCCGCCGCCGCAGCAGCAAATTTGGAAATCTTCAACTTGTTGACTGCAATAGCCGGAGCTTCGCAGGGAAAATTTGAAGAAAGAAAATCGCAAGTTCCAGATAGAGAGCAGCTTGTTCAGATTCTCAATAGAATACCTTTGCCTGCGGATATTGCAACCAAGTTGCTAGATGCTGGTAATGTCAATGGGAAGAAAGAGCATATACAATCGCAGACACCATCCTCCTATCATCATCATGACCAACTGAACCACACCCCGGCTGCCCCATTAACTATGGACTTGCTTGCTGTTCTTTCCACCACTCTGTCTGGGTCTGGCCCTGATGCTAATGCGTCCCCCTCACAAAATCGAAGCTGCAGCAGTGATGGCGGTAGTGTTAAGTCGAGAAGTATTGCTGATCAGGCGAGACAACAGCACTTATTTGGCGGGGAAAGAAGCAGTAGCAGTTCCCAGTCTCCTGTTGAAGATTCAGACTGCCAGGAGGATGTTAGAGTTAATTTACCGCTGCAACTCTTTAGCTCCTCCCCGGAAGAGGACAGCTTGCCTAAACTAGCATCTTCAAGAAAGTATTTCTCGTCTGACAGTAGTAACCCTGCTGAAGAGAGGTCACCATCGTCTTCTCCTCCTGTTGTGGAGATGCAGTTTGATTTGCAGGGTGGTGCTACAGGTCTAAAGCCAGAGAGCATATCCTCTGGAAGAGGAGTTAATTCAAACAAGGAAGCTAGCCAAAGTCATAGTTGTAATATCTCTCTCGATCTATTTAAAGGGTCAAATAACAGGATCCAACAACCTAGTTGGCTTCAAAGCGTTCCATTTCAAGCTGGGTATACATCTTCGGGCTCTGATCATTCACCTCCCAGTTTGAATTCAGATGCACAGGATCGCACTGGTAGAATAATGTTTAAACTATTTGACAAGCATCCCAGCAATTTCCCAGGAACATTGCGAGCACAGATTTACAATTGGCTTTCTAATAGGCCATCAGACATGGAGAGCTACATACGGCCTGGTTGTGTGGTCCTATCACTTTATGCTTCAATGTCTTCTGCTGCCTGGGAGAAACTAGAGGAAAACTTTCTCCAACATGTTCATTCTTTAATTCAAAATTCAGATTCTGACTTTTGGAGAAATGGAAGGTTTCTAGTACATTCTGGCAGTCAATTAGCTTCACACAAAGATGGAAACGTACGCATATGCAAACCGTGGAGAACATGGAAGTCGCCAGAGTTGATGTGTGTGTCCCCTTTGGCAATTGTTAGTGGACAGGAAACCTCTATTTCATTGAAGGGTAGAAACCTGTCAACTCCTGGCACAAAGATTCACTGTACAGGTACCGGCTCTTACTCATCAGCAGAAGTCATTGGATCTTCATATCCTGGTGTGATGTATGATAAGATAAAGTTGAGTGGTTTTAAAGTTCAGGATGTTTCACCTGGTGTTGTAGGTCGCTTTTTTATTGAGATTGAAAATGGTTTCAAGGGCAACAGTTTTCCAGTGATAATAGCTGATGAGACCATTTGCAAGGAACTGAGACCACTTGAGTCTGAATTTGACGAGGAGGAAAAAATATGTGATGCTATTTCAGAGGAGCATGAGCATCACTTTGGAAGGCCGAGATCAAGGGAGGAGGCTTTGCATTTTTTGAATGAGCTTGGCTGGCTGTTCCAAAGAGAAAGATTCTCATATGTGCACGAGGTTCCATGTTATTCACTTGACAGGTTCAAATTTGTACTCACATTTGCTGTGGAAAGAAACTGTTGCATGATAGTCAAAACCCTCCTTGATGTGCTGGTTGATAAACACTTGCAAGGGGAATGGTTGTCAACAGGGTCAGTGGAGATGTTGAATGCAATTCAACTCTTAAATAGAGCAGTGAAAAGAAAGTACACAGGCATGGTTGATTTGCTCATCCACTATTCTTTACCGAACAAAAATAGTACATCCAGGAAATATGTATTTCCTCCGAATCTTGAGGGTCCGGCTGGTATTACACCCTTGCACTTGGCAGCATGCACGTCTGGTTCTGATAGTGTAGTTGACTCTTTAACAAGTGACCCACAGGAGATTGGCTTGAAGTGCTGGGAATCCCTTGTGGATGCCAATGGGCAGACTCCACATGCCTATGCTATGATGAGGAATAATAACTCTTATAATGTGCTGGTTGCCCGAAAACTTGCTGACAGACGAAGGGGTGAAATTTCAGTAACAATTGAGAATGAGATAAAGCAACCCTCACTGAGGGTGGAGCTTAAGCAAAAGCAAAGTAACGTACTCAAACGAGGTCAGAGTTCTTGTGCCAAGTGTGCGACTGCAGAAATTCACTACAACAGAAGAATTCCAGGTTCACAGGGTTTGCTTCACCGGCCCTTTATTTATTCAATGCTAGCTGTTGCTGCTGTCTGTGTATGTGTTTGTGTGTTCTTCCGAGGACGCCCTTTCGTGGGCTCAGTTGCTCCCTTCAGTTGGGAAAATCTGGATTATGGCACAATGTAA 3024 0.4759 MEKVAAPPILMQRKRDLSYGVVSGSPADTWKWEWDSVRFAGKPPSDDVVFEEESVAAVAPLQLNLAGRVSGGANKRVRSGSPGTASYPMCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSATPAPAAAAAAANLEIFNLLTAIAGASQGKFEERKSQVPDREQLVQILNRIPLPADIATKLLDAGNVNGKKEHIQSQTPSSYHHHDQLNHTPAAPLTMDLLAVLSTTLSGSGPDANASPSQNRSCSSDGGSVKSRSIADQARQQHLFGGERSSSSSQSPVEDSDCQEDVRVNLPLQLFSSSPEEDSLPKLASSRKYFSSDSSNPAEERSPSSSPPVVEMQFDLQGGATGLKPESISSGRGVNSNKEASQSHSCNISLDLFKGSNNRIQQPSWLQSVPFQAGYTSSGSDHSPPSLNSDAQDRTGRIMFKLFDKHPSNFPGTLRAQIYNWLSNRPSDMESYIRPGCVVLSLYASMSSAAWEKLEENFLQHVHSLIQNSDSDFWRNGRFLVHSGSQLASHKDGNVRICKPWRTWKSPELMCVSPLAIVSGQETSISLKGRNLSTPGTKIHCTGTGSYSSAEVIGSSYPGVMYDKIKLSGFKVQDVSPGVVGRFFIEIENGFKGNSFPVIIADETICKELRPLESEFDEEEKICDAISEEHEHHFGRPRSREEALHFLNELGWLFQRERFSYVHEVPCYSLDRFKFVLTFAVERNCCMIVKTLLDVLVDKHLQGEWLSTGSVEMLNAIQLLNRAVKRKYTGMVDLLIHYSLPNKNSTSRKYVFPPNLEGPAGITPLHLAACTSGSDSVVDSLTSDPQEIGLKCWESLVDANGQTPHAYAMMRNNNSYNVLVARKLADRRRGEISVTIENEIKQPSLRVELKQKQSNVLKRGQSSCAKCATAEIHYNRRIPGSQGLLHRPFIYSMLAVAAVCVCVCVFFRGRPFVGSVAPFSWENLDYGTM* 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01784 1007 Gene3D - 80 151 IPR036893 GO:0003677|GO:0005634
Lapu2g01784 1007 Gene3D - 751 942 IPR036770 -
Lapu2g01784 1007 ProSiteProfiles Zinc finger SBP-type profile. 87 164 IPR004333 GO:0003677
Lapu2g01784 1007 MobiDBLite consensus disorder prediction 242 258 - -
Lapu2g01784 1007 MobiDBLite consensus disorder prediction 242 261 - -
Lapu2g01784 1007 Pfam SBP domain 90 163 IPR004333 GO:0003677
Lapu2g01784 1007 SUPERFAMILY SBT domain 88 168 IPR036893 GO:0003677|GO:0005634
Lapu2g01784 1007 MobiDBLite consensus disorder prediction 280 419 - -
Lapu2g01784 1007 MobiDBLite consensus disorder prediction 153 175 - -
Lapu2g01784 1007 MobiDBLite consensus disorder prediction 280 333 - -
Lapu2g01784 1007 MobiDBLite consensus disorder prediction 344 389 - -
Lapu2g01784 1007 SUPERFAMILY Ankyrin repeat 754 895 IPR036770 -
Lapu2g01784 1007 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 796 IPR044817 GO:0003677
Lapu2g01784 1007 FunFam Squamosa promoter-binding-like protein 14 81 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01784 Lapu-Chr2 31491766 31498455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01784 3 1007 SBP-box Gene Family AT1G20980 52.507 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lapu2g01784 SBP 1.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01784 - - gmx:100819004 1728.38