Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01723 ATGATGACACCAAACTTGAACTTGGGGCCTGAAGATGATTTAAAAATCTGCAGCCAAGTGGGATCAAATGAATCACTACAAGATTTTACTGTGGACAACACCACCAGTTCCTCCTGTCTTACAAAGGCTGATCCTGATTCAGGTTCTCTATCCCTTGACTTGACCCTCAACTTCAATCCCAGTGATGAAGAGTTGAAAGCTGCAAGTGACACTAACTGTGAAGTAGGAGGTGAAACTCATGCCTCAGCATTAGCAGTTCCTAGAGTTTTCTCTTGTAACTATTGCCGGAGGAAATTCTTCAGCTCGCAGGCATTAGGGGGCCATCAGAATGCTCACAAAAGGGAGAGAACAATGGCAAAGCGTGCAATGCGAATGGGGATGTTCACTGAAAGGTACACAAGCTTAGCATCTCTGCCTCTCCATGGATCTGCTTTTAGGTCCCTTGGACTTGAAGCTCATGCTGCAATGCACCAAGGACATGTGCATTCATTCAGGGCTCCTGATATGAGAGCTGCAGCAAAATTCGGGAAAAACTATTTTCGGACACCGATCTTTGTTCAAGATGATGATGTTGGTCTGTTTTGGCCTGGAAGTTTCAGACAGATAGATGAAAGGGGTGGCATTGGTCTTAATCTGAGGCTTGATGAACTTGCTCATAATTCAAGTACTAGGTTTGTAGCAACTGCACCTCCAGCACAAGCATCTGCATCTCCTGATCTCACTCTGAGGCTTTGA 735 0.4517 MMTPNLNLGPEDDLKICSQVGSNESLQDFTVDNTTSSSCLTKADPDSGSLSLDLTLNFNPSDEELKAASDTNCEVGGETHASALAVPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSAFRSLGLEAHAAMHQGHVHSFRAPDMRAAAKFGKNYFRTPIFVQDDDVGLFWPGSFRQIDERGGIGLNLRLDELAHNSSTRFVATAPPAQASASPDLTLRL* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01723 244 Gene3D Classic Zinc Finger 78 137 - -
Lapu2g01723 244 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Lapu2g01723 244 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 45 165 IPR044246 GO:0009788
Lapu2g01723 244 SUPERFAMILY beta-beta-alpha zinc fingers 88 118 IPR036236 -
Lapu2g01723 244 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Lapu2g01723 244 FunFam Zinc finger protein 2 68 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01723 Lapu-Chr2 30963161 30966537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01723 88 244 C2H2 Transcription Factor Family AT1G66140 43.646 3.29e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu2g01723 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01723 - - gmx:100777133 390.193