Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01716 ATGGGTTTTGTTTCTTGGCTTGTTGTGTTGTTGCTTTGTGTGGGGTTTGAGTGTGCGAGGTGTCAAGATGATGTTGTGATGAACATATTGAAGAAGGCTGTGGAAGAACCCAATGGTCTTCAATGGAATGACCCAGATGTGTGTAAATGGAAACACGTTCAGTGCAGCGGCATGAAGAGGATCACTGCAATTCAAATTGGGGGACAGGGTTTGAATGGTTCTCTGCCTAAGGAACTGGGGCAGCTCTCAGAGTTGACACGGTTTGAGTGCATGAACAATGGCTTCACTGGGGCATTTCCTAACCTGCCGAAGTCCCTTGAGGTTCTGCTCATCCACAACAACAATTTCCAGTCCTTTCCGGGTGATTTCTTCACCGGCATGACCAATCTGCAATATGTGAGCATTGGCTACAACTCTTTTTCCCAGTGGGGAATTCCTGATAACCTCAAGGACTGTGTGGCTCTCAGGAGTTTCTCTGCAATCAGTGCTGGTTTTGTGGGGAAAATCCCAGATTTTTTTGGTAAAGATGGTCCCTTCCCAGGTTTGGTTACTCTTAGCTTGAGTTTTAATTCTCTTGAAGGAGGGTTGCCTGCAACCTTTTCTGGGAGTTCTATGGAGACACTTTGGTTGAATGGTCAGAAAAGTGATGGTAAACTCAATGGTACCCTTGATGTGTTAAAGAGCATGACATATTTGAAACAAATTTGGGTGCATGGTAACTCATTCACGGGTCCTATACCGGACTTGTCAAATCTTGATCAGCTATATGATTTGAGCTTGAGGGATAACCAGTTAACTGGGGTTGTTCCACCCTCTATCACTGCTCTTCCCGCTCTTAAAATAGTGAATTTGACGAATAATTTACTCCAAGGATCTCCTCCCTTGTTCAAAAATGGAGTGCAGGTTGATGATGATTTAGAGAAGGGGATCAATAGTTTTTGCACAAAGGAGGCTGGTAAGCCATGCAGTCCTCTTGTGGATGCTTTGCTTTCTGTTGTTGGACCTTTTGGATATCCTCTTAGACTTGCTGAAAGTTGGACGGGGAATGACCCTTGTGCTCAAAGATGGTTGGGGATTGTTTGCTCTAATGGTAACGTTTCCATCATTAACTTGCAGAGCATGAATCTCTCTGGTAACATTTCTCCCAGTTTAGCTTCTCTAACATCTCTGACAAAGTTGCTTCTTGCCAACAATGGCCTCACTGGTACCATTCCAAGTGAACTCACCAGCATGCCTCTTTTGGAAGAATTGGATGTTTCTAATAATCAATTGCATGGCAAGGTGCCGTCTTTTCGTGGGGGTGTAGTTATAAAAACTGGTGGGAATCCAGATATTGGAAAGGATAAACCTGAAGCCCCGCCTGACTCAAGTCCTCGGAGTAAATCTGGAGGTGAAGTTAAGAAACATAATACTGGAGCAATTGTTGGCACTGTATTGGGGGGTGTCAGTTTACTTGGTTTAGTGGCTTTGATATTTGTTATGTACGGTAGAAAACGTAAGCACGCAGGCAAAGTTCAAAGTCCTAGTGCAATAGTGGTACATCCTCGTTATTCTGGAGATGGAAATGGTCTGAAGATAAGTGTTGCAGATGCTGGTGGAAGTGGTGGTGGTGGTGGTGGAGGAGGCACCGGTGTACTTAGTCCAGCTAGTAGTGTCCAACATGTGGAAGCTGGTAATGTGGTTATTTCAATCCAAGTTTTGAGGGAAGTTACAAATAATTTCAGTGAGGGAAACATATTGGGGAAAGGTGGTTTTGGCACTGTATACAAAGGGGAATTGCATGATGGAACAAAAATTGCAGTAAAAAGGATGGAATCTGGAATGATGGGTGAGAAGGGGCTAAGTGAGTTTGAGTCTGAAATTGCAGTACTTACTAAGGTTAGACACAGACATCTGGTTGCACTAGAAGGCCACTGCTTGGATGGAAATGAGAAGCTTCTTGTGTATGAATATATGCCTCAGGGTCCTCTTAGTAAACATTTATTTGACTGGAAACATGAAGGGATACAGCCACTGGAATGGAAGAGAAGGCTTTCCATTGCCTTGGATGTTGCTAGAGGTGTTGAATATCTTCACGGTTTGGCCCAACAAATTTTCATCCACAGGGATCTAAAACCATCAAACATCTTGCTTGGGGATGATATGCGGGCCAAAGTGTCAGACTTTGGATTGGTAAGGCTTGCTCCGGAAGGACAGACCTCATTTGAAACTAGGCTTGCTGGAACTTTTGGATATTTGGCTCCAGAGTATGCAGTCACTGGACGAGTTACAACAAAGGTTGATGTTTACAGCTATGGCGTGATTCTGATGGAGATGATAACAGGAAGGAGAGCAATTGACAACAGCCAACCAGAAGAGAATATCCACCTTGTTACATGGTTCAGGAGGATGCTACTGAACAAAGACTCCTTTGGAAAGATTGTTGACCCCATAATGTATATTGATGAGGAGGCCTTACCCAGTTGTAGGACTGTGGCTGAGTTGGCTGGTCACTGTTGTGCAAGGGAGCCTTACCAGCGTCCAGACATGAGCCATGTGGTGAATGTCCTGGCCCCTCTTGTTGAGATTTGGAAGCCTTCTGAGACAGATGATGAAGACATTTATGGGATTGACTTGGATATGACCTTGCCTCAAGCACTCAGTAAGTGGCAGGCTGTTGAAGGAAGGAGCACCTTTGATGTTTCAACCTCTTCATCAATGCTTACTAGTGAAGAAAATACACAGTCTAGCATACCAACTAGGCCTTTTGGATTTGCTAATTCTTTTAATTCCTCAGATGGAAGATGA 2787 0.441 MGFVSWLVVLLLCVGFECARCQDDVVMNILKKAVEEPNGLQWNDPDVCKWKHVQCSGMKRITAIQIGGQGLNGSLPKELGQLSELTRFECMNNGFTGAFPNLPKSLEVLLIHNNNFQSFPGDFFTGMTNLQYVSIGYNSFSQWGIPDNLKDCVALRSFSAISAGFVGKIPDFFGKDGPFPGLVTLSLSFNSLEGGLPATFSGSSMETLWLNGQKSDGKLNGTLDVLKSMTYLKQIWVHGNSFTGPIPDLSNLDQLYDLSLRDNQLTGVVPPSITALPALKIVNLTNNLLQGSPPLFKNGVQVDDDLEKGINSFCTKEAGKPCSPLVDALLSVVGPFGYPLRLAESWTGNDPCAQRWLGIVCSNGNVSIINLQSMNLSGNISPSLASLTSLTKLLLANNGLTGTIPSELTSMPLLEELDVSNNQLHGKVPSFRGGVVIKTGGNPDIGKDKPEAPPDSSPRSKSGGEVKKHNTGAIVGTVLGGVSLLGLVALIFVMYGRKRKHAGKVQSPSAIVVHPRYSGDGNGLKISVADAGGSGGGGGGGGTGVLSPASSVQHVEAGNVVISIQVLREVTNNFSEGNILGKGGFGTVYKGELHDGTKIAVKRMESGMMGEKGLSEFESEIAVLTKVRHRHLVALEGHCLDGNEKLLVYEYMPQGPLSKHLFDWKHEGIQPLEWKRRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQTSFETRLAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEMITGRRAIDNSQPEENIHLVTWFRRMLLNKDSFGKIVDPIMYIDEEALPSCRTVAELAGHCCAREPYQRPDMSHVVNVLAPLVEIWKPSETDDEDIYGIDLDMTLPQALSKWQAVEGRSTFDVSTSSSMLTSEENTQSSIPTRPFGFANSFNSSDGR* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01716 928 Gene3D Phosphorylase Kinase; domain 1 546 651 - -
Lapu2g01716 928 ProSitePatterns Serine/Threonine protein kinases active-site signature. 699 711 IPR008271 GO:0004672|GO:0006468
Lapu2g01716 928 ProSitePatterns Protein kinases ATP-binding region signature. 580 602 IPR017441 GO:0005524
Lapu2g01716 928 FunFam Leucine-rich repeat receptor-like kinase 324 448 - -
Lapu2g01716 928 SUPERFAMILY L domain-like 25 429 - -
Lapu2g01716 928 SMART LRR_typ_2 387 410 IPR003591 -
Lapu2g01716 928 SMART LRR_typ_2 179 202 IPR003591 -
Lapu2g01716 928 SMART LRR_typ_2 411 433 IPR003591 -
Lapu2g01716 928 SMART LRR_typ_2 102 126 IPR003591 -
Lapu2g01716 928 SMART LRR_typ_2 276 298 IPR003591 -
Lapu2g01716 928 FunFam Receptor-like kinase TMK4 21 319 - -
Lapu2g01716 928 CDD STKc_IRAK 580 853 - -
Lapu2g01716 928 Gene3D Ribonuclease Inhibitor 325 449 IPR032675 -
Lapu2g01716 928 Pfam Protein kinase domain 575 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g01716 928 MobiDBLite consensus disorder prediction 439 468 - -
Lapu2g01716 928 Pfam Leucine rich repeat N-terminal domain 40 56 IPR013210 -
Lapu2g01716 928 Pfam Leucine rich repeat N-terminal domain 327 362 IPR013210 -
Lapu2g01716 928 SUPERFAMILY Protein kinase-like (PK-like) 553 859 IPR011009 -
Lapu2g01716 928 MobiDBLite consensus disorder prediction 894 928 - -
Lapu2g01716 928 Gene3D Ribonuclease Inhibitor 22 320 IPR032675 -
Lapu2g01716 928 ProSiteProfiles Protein kinase domain profile. 574 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu2g01716 928 FunFam receptor protein kinase TMK1 652 869 - -
Lapu2g01716 928 MobiDBLite consensus disorder prediction 444 466 - -
Lapu2g01716 928 PANTHER OSJNBA0070M12.3 PROTEIN 7 928 - -
Lapu2g01716 928 Gene3D Transferase(Phosphotransferase) domain 1 652 869 - -
Lapu2g01716 928 FunFam receptor protein kinase TMK1 542 651 - -
Lapu2g01716 928 SMART serkin_6 574 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01716 Lapu-Chr2 30895665 30900155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01716 58 864 Receptor kinase-like Gene Family AT1G55610 28.682 4.16e-78 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Lapu2g01716 Pkinase 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01716 K00924 - gmx:100776064 1545.41