Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01704 ATGGATCACCCAAATCCACCACACTCCTCCAAACCCAAACACGCTTCAGATTCGCCGCTCCACCGTGCCACTCCCACCGCTAACCGTTTCCGGAGCTCCCAACTTCTCAGGGAGAGAGAAGGAAAGGGTGAAGGGGAAAAGGAGGATCCGAGTGCCTCACGAAAGGTTCTGAAAGCAGACCGCGAGAAACTCAGAAGAGATCGACTCAACGAACACTTCCAAGAGTTGGGAAACACGTTAGATCCTGATAGACCCAAGAATGACAAGGCAACTATCCTTACTGAGACCGTCCAAATGCTAAAGGACTTAACTGCTGAAGTTAATAGGCTTAAAACTGAACATAAAGCACTTTCTGAAGAGTCACGCGAACTAATGCAGGAAAAAAATGAGCTCAGAGAAGAGAAAACATCTCTTAAATCTGATATAGAAAATCTTAATGCCCAGTATCAGCAGAGAGTGAGAATTATGTTCCCATCATGGACTGCAATTGACCATTCCGTTGTCATTAGTCCACCTTACTCATATCCACTTCCTATACCTATCCCTCCTGCTCCAATTTCCATCCACCCATCTCTTCAGCCTTTTCCTTTCTTTGGAAATCAAAACCCTGGTCACATTCCTAGTCCTTGTTCAATGTATGTCCCGTATTCTACTCCACCTAATGCCCCAGTTGAGCCACCATCTGCGCTGTATGCTTCCACATCTCACGCATCGAACCAAAAGGAATCTTGTAGCAAGTCATCGGGTGATAGAAGGCCTAGTAGTGATGCTGAAAGATGTAGCGAGTCTCATGATGTGGCCACAGAACTTGAACTTAAGATGCCTGGATCATCATCAACACAACAGGATTGCACTTCTGGAGGAAGGAAGGGCAAGCATTCAGTGATAAAGGATAGAACCATCATAGGTGGGAGTGCTTCAAGCCAGTATTCTTCGTCTCAAGGACTTCAAGATAGCTCCAACAGTGTGGGTGACATTCCAAAGACTGATAACTGA 996 0.4578 MDHPNPPHSSKPKHASDSPLHRATPTANRFRSSQLLREREGKGEGEKEDPSASRKVLKADREKLRRDRLNEHFQELGNTLDPDRPKNDKATILTETVQMLKDLTAEVNRLKTEHKALSEESRELMQEKNELREEKTSLKSDIENLNAQYQQRVRIMFPSWTAIDHSVVISPPYSYPLPIPIPPAPISIHPSLQPFPFFGNQNPGHIPSPCSMYVPYSTPPNAPVEPPSALYASTSHASNQKESCSKSSGDRRPSSDAERCSESHDVATELELKMPGSSSTQQDCTSGGRKGKHSVIKDRTIIGGSASSQYSSSQGLQDSSNSVGDIPKTDN* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01704 331 PANTHER TRANSCRIPTION FACTOR BHLH121 31 329 IPR044579 GO:0003700|GO:0006879
Lapu2g01704 331 MobiDBLite consensus disorder prediction 301 331 - -
Lapu2g01704 331 Coils Coil 93 148 - -
Lapu2g01704 331 MobiDBLite consensus disorder prediction 224 331 - -
Lapu2g01704 331 Pfam Helix-loop-helix DNA-binding domain 54 103 IPR011598 GO:0046983
Lapu2g01704 331 MobiDBLite consensus disorder prediction 245 269 - -
Lapu2g01704 331 Gene3D - 52 155 IPR036638 GO:0046983
Lapu2g01704 331 CDD bHLH_AtILR3_like 58 132 - -
Lapu2g01704 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 103 IPR011598 GO:0046983
Lapu2g01704 331 MobiDBLite consensus disorder prediction 1 18 - -
Lapu2g01704 331 MobiDBLite consensus disorder prediction 273 288 - -
Lapu2g01704 331 MobiDBLite consensus disorder prediction 1 87 - -
Lapu2g01704 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 123 IPR036638 GO:0046983
Lapu2g01704 331 MobiDBLite consensus disorder prediction 33 87 - -
Lapu2g01704 331 SMART finulus 59 109 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01704 Lapu-Chr2 30798197 30802874 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01704 43 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 57.322 7.42e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu2g01704 HLH 2.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01704 - - gmx:100818281 465.307